Skip to content
This repository was archived by the owner on Feb 26, 2025. It is now read-only.
This repository was archived by the owner on Feb 26, 2025. It is now read-only.

Missing iter_type kwarg in morphio.Morphology.iter #417

Description

@eleftherioszisis
import morphio

m1 = morphio.mut.Morphology()
m1.iter(morphio.IterType.depth_first)  # works
m1.iter(iter_type=morphio.IterType.depth_first)  # works

m2 = m1.as_immutable()
m2.iter(morphio.IterType.depth_first)  # works
m2.iter(iter_type=morphio.IterType.depth_first)  # fails

Traceback:

TypeError                                 Traceback (most recent call last)
<ipython-input-6-ab9de27952d8> in <module>
      7 m2 = m1.as_immutable()
      8 m2.iter(morphio.IterType.depth_first)  # works
----> 9 m2.iter(iter_type=morphio.IterType.depth_first)  # fails

TypeError: iter(): incompatible function arguments. The following argument types are supported:
    1. (self: morphio._morphio.Morphology, Section iterator that runs successively on every neurite
iter_type controls the order of iteration on sections of a given neurite. 2 values can be passed:
- morphio.IterType.depth_first (default)
- morphio.IterType.breadth_first (default)
iter_type: morphio._morphio.IterType = <IterType.depth_first: 0>) -> Iterator

Invoked with: <morphio._morphio.Morphology object at 0x7f3df81e73b0>; kwargs: iter_type=<IterType.depth_first: 0>

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions