From f5479869ab8cd6c52e5a8ea01f94c77e8436a97c Mon Sep 17 00:00:00 2001 From: Eric Hanson Date: Wed, 12 Aug 2026 15:34:37 -0400 Subject: [PATCH 1/2] Align with spec-python-projects Why these changes are being introduced: * Aligning this repo with our current best practices represented by spec-python-projects How this addresses that need: * Various updates produced by running the /mitlib-spec-align-project skills which were reviewed and successfully tested. Side effects of this change: * NA Relevant ticket(s): * NA --- .github/workflows/ci.yml | 41 +- .gitignore | 4 +- .pre-commit-config.yaml | 25 +- Makefile | 121 ++-- README.md | 2 + pyproject.toml | 5 +- uv.lock | 1398 +++++++++++++++++++++++++------------- 7 files changed, 1026 insertions(+), 570 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 437109a..7cedfb0 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -1,46 +1,11 @@ name: CI +permissions: read-all on: pull_request: paths-ignore: - '.github/**' jobs: test: - # TODO: move this into a shared workflow, https://github.com/MITLibraries/.github/tree/main/.github/workflows - name: Run tests and report coverage - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v4 - - - name: Install uv - uses: astral-sh/setup-uv@v6 - - - name: Create virtual environment - run: | - make install - - - name: Run tests and make coverage report - run: | - make test - make coveralls - - - name: Coveralls - uses: coverallsapp/github-action@v2.3.0 - with: - github-token: ${{ secrets.GITHUB_TOKEN }} - fail-on-error: false + uses: mitlibraries/.github/.github/workflows/python-uv-shared-test.yml@main lint: - # TODO: move this into a shared workflow, https://github.com/MITLibraries/.github/tree/main/.github/workflows - name: Run linters - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v4 - - - name: Install uv - uses: astral-sh/setup-uv@v6 - - - name: Create virtual environment - run: | - make install - - - name: Lint - run: make lint + uses: mitlibraries/.github/.github/workflows/python-uv-shared-lint.yml@main diff --git a/.gitignore b/.gitignore index 8fecfa3..6db3702 100644 --- a/.gitignore +++ b/.gitignore @@ -157,5 +157,5 @@ output/ .vscode/ AGENTS.md - -.arch_tag \ No newline at end of file +.arch_tag +.tool-versions diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index eb7bc47..5645bb7 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,29 +1,30 @@ default_language_version: python: python3.13 + +default_stages: + - pre-push + repos: - repo: local hooks: - - id: black-apply - name: black-apply - entry: uv run black + - id: ruff-format + name: ruff-format + entry: uv run ruff format --diff language: system pass_filenames: true types: ["python"] + - id: mypy name: mypy entry: uv run mypy language: system pass_filenames: true types: ["python"] - exclude: "tests/" - - id: ruff-apply - name: ruff-apply - entry: uv run ruff check --fix + exclude: "(tests/|output/|migrations/)" + + - id: ruff-check + name: ruff-check + entry: uv run ruff check language: system pass_filenames: true types: ["python"] - - id: pip-audit - name: pip-audit - entry: uv run pip-audit --ignore-vuln GHSA-4xh5-x5gv-qwph - language: system - pass_filenames: false \ No newline at end of file diff --git a/Makefile b/Makefile index a1c63d2..8dd927d 100644 --- a/Makefile +++ b/Makefile @@ -6,28 +6,33 @@ ECR_URL_DEV := 222053980223.dkr.ecr.us-east-1.amazonaws.com/marimo-launcher-dev CPU_ARCH ?= $(shell cat .aws-architecture 2>/dev/null || echo "linux/amd64") ### End of Terraform-generated header ### +CPU_ARCH ?= $(shell cat .aws-architecture 2>/dev/null || echo "linux/amd64") help: # Preview Makefile commands @awk 'BEGIN { FS = ":.*#"; print "Usage: make \n\nTargets:" } \ /^[-_[:alpha:]]+:.?*#/ { printf " %-15s%s\n", $$1, $$2 }' $(MAKEFILE_LIST) # ensure OS binaries aren't called if naming conflict with Make recipes -.PHONY: help dist-dev publish-dev dist-stage publish-stage venv install update test coveralls lint black mypy ruff safety lint-apply black-apply ruff-apply +.PHONY: help dist-dev publish-dev dist-stage publish-stage venv install update test coveralls lint lint-fix security check-arch docker-clean marimo-launcher mypy ruff ############################################## # Python Environment and Dependency commands ############################################## -install: .venv .git/hooks/pre-commit # Install Python dependencies and create virtual environment if not exists +install: .venv .git/hooks/pre-commit .git/hooks/pre-push # Install Python dependencies and create virtual environment if not exists uv sync --dev .venv: # Creates virtual environment if not found @echo "Creating virtual environment at .venv..." uv venv .venv -.git/hooks/pre-commit: # Sets up pre-commit hook if not setup - @echo "Installing pre-commit hooks..." - uv run pre-commit install +.git/hooks/pre-commit: # Sets up pre-commit commit hooks if not setup + @echo "Installing pre-commit commit hooks..." + uv run pre-commit install --hook-type pre-commit + +.git/hooks/pre-push: # Sets up pre-commit push hooks if not setup + @echo "Installing pre-commit push hooks..." + uv run pre-commit install --hook-type pre-push venv: .venv # Create the Python virtual environment @@ -47,35 +52,34 @@ coveralls: test # Write coverage data to an LCOV report uv run coverage lcov -o ./coverage/lcov.info #################################### -# Code quality and safety commands +# Code linting and formatting #################################### -lint: black mypy ruff safety # Run linters +lint: # Run linting, alerts only, no code changes + uv run ruff format --diff + uv run mypy . + uv run ruff check . -black: # Run 'black' linter and print a preview of suggested changes - uv run black --check --diff . +lint-fix: # Run linting, auto fix behaviors where supported + uv run ruff format . + uv run ruff check --fix . -mypy: # Run 'mypy' linter +mypy: # Run 'mypy' type checker uv run mypy . ruff: # Run 'ruff' linter and print a preview of errors uv run ruff check . -safety: # Check for security vulnerabilities - uv run pip-audit --ignore-vuln GHSA-4xh5-x5gv-qwph - -lint-apply: black-apply ruff-apply # Apply changes with 'black' and resolve 'fixable errors' with 'ruff' - -black-apply: # Apply changes with 'black' - uv run black . - -ruff-apply: # Resolve 'fixable errors' with 'ruff' - uv run ruff check --fix . +security: # Run security / vulnerability checks + uv run pip-audit #################################### # CLI #################################### +marimo-launcher: # CLI without any arguments, utilizing uv script entrypoint + uv run marimo-launcher + cli-test-inline-run: uv run marimo-launcher \ run \ @@ -113,54 +117,51 @@ docker-test-run: # Test local docker container with test fixture notebook # Terraform #################################### -### Terraform-generated Developer Deploy Commands for Dev environment ### -check-arch: - @ARCH_FILE=".aws-architecture"; \ - if [[ "$(CPU_ARCH)" != "linux/amd64" && "$(CPU_ARCH)" != "linux/arm64" ]]; then \ - echo "Invalid CPU_ARCH: $(CPU_ARCH)"; exit 1; \ - fi; \ - if [[ -f $$ARCH_FILE ]]; then \ - echo "latest-$(shell echo $(CPU_ARCH) | cut -d'/' -f2)" > .arch_tag; \ +### Terraform-generated Developer Deploy Commands for Dev environment ### +check-arch: # Validate CPU_ARCH and write .arch_tag + @if [[ "$(CPU_ARCH)" != "linux/amd64" && "$(CPU_ARCH)" != "linux/arm64" ]]; then \ + echo "Invalid CPU_ARCH: $(CPU_ARCH)"; exit 1; \ + fi; \ + if [[ -f .aws-architecture ]]; then \ + echo "latest-$$(echo $(CPU_ARCH) | cut -d'/' -f2)" > .arch_tag; \ else \ echo "latest" > .arch_tag; \ fi dist-dev: check-arch ## Build docker container (intended for developer-based manual build) - @ARCH_TAG=$$(cat .arch_tag); \ - docker buildx inspect $(ECR_NAME_DEV) >/dev/null 2>&1 || docker buildx create --name $(ECR_NAME_DEV) --use; \ - docker buildx use $(ECR_NAME_DEV); \ + docker buildx inspect $(ECR_NAME_DEV) >/dev/null 2>&1 || docker buildx create --name $(ECR_NAME_DEV) --use + docker buildx use $(ECR_NAME_DEV) docker buildx build --platform $(CPU_ARCH) \ --load \ - --tag $(ECR_URL_DEV):$$ARCH_TAG \ - --tag $(ECR_URL_DEV):make-$$ARCH_TAG \ - --tag $(ECR_URL_DEV):make-$(shell git describe --always) \ - --tag $(ECR_NAME_DEV):$$ARCH_TAG \ - . + -t $(ECR_URL_DEV):latest \ + -t $(ECR_URL_DEV):`git describe --always` \ + -t $(ECR_NAME_DEV):latest . publish-dev: dist-dev ## Build, tag and push (intended for developer-based manual publish) - @ARCH_TAG=$$(cat .arch_tag); \ - aws ecr get-login-password --region us-east-1 | docker login --username AWS --password-stdin $(ECR_URL_DEV); \ - docker push $(ECR_URL_DEV):$$ARCH_TAG; \ - docker push $(ECR_URL_DEV):make-$$ARCH_TAG; \ - docker push $(ECR_URL_DEV):make-$(shell git describe --always); \ - echo "Cleaning up dangling Docker images..."; \ - docker image prune -f --filter "dangling=true" - - -### If this is a Lambda repo, uncomment the two lines below ### -# update-lambda-dev: ## Updates the lambda with whatever is the most recent image in the ecr (intended for developer-based manual update) -# @ARCH_TAG=$$(cat .arch_tag); \ -# aws lambda update-function-code \ -# --region us-east-1 \ -# --function-name $(FUNCTION_DEV) \ -# --image-uri $(ECR_URL_DEV):make-$$ARCH_TAG - -docker-clean: ## Clean up Docker detritus - @ARCH_TAG=$$(cat .arch_tag); \ - echo "Cleaning up Docker leftovers (containers, images, builders)"; \ - docker rmi -f $(ECR_URL_DEV):$$ARCH_TAG; \ - docker rmi -f $(ECR_URL_DEV):make-$$ARCH_TAG; \ - docker rmi -f $(ECR_URL_DEV):make-$(shell git describe --always) || true; \ - docker rmi -f $(ECR_NAME_DEV):$$ARCH_TAG || true; \ + aws ecr get-login-password --region us-east-1 | docker login --username AWS --password-stdin $(ECR_URL_DEV) + docker push $(ECR_URL_DEV):latest + docker push $(ECR_URL_DEV):`git describe --always` + +### Terraform-generated manual shortcuts for deploying to Stage. This requires ### +### that ECR_NAME_STAGE, ECR_URL_STAGE, and FUNCTION_STAGE environment ### +### variables are set locally by the developer and that the developer has ### +### authenticated to the correct AWS Account. The values for the environment ### +### variables can be found in the stage_build.yml caller workflow. ### +dist-stage: ## Only use in an emergency + docker buildx build --platform $(CPU_ARCH) \ + --load \ + -t $(ECR_URL_STAGE):latest \ + -t $(ECR_URL_STAGE):`git describe --always` \ + -t $(ECR_NAME_STAGE):latest . + +publish-stage: ## Only use in an emergency + aws ecr get-login-password --region us-east-1 | docker login --username AWS --password-stdin $(ECR_URL_STAGE) + docker push $(ECR_URL_STAGE):latest + docker push $(ECR_URL_STAGE):`git describe --always` + +docker-clean: # Clean up Docker detritus + docker rmi -f $(ECR_URL_DEV):latest || true + docker rmi -f $(ECR_URL_DEV):`git describe --always` || true + docker rmi -f $(ECR_NAME_DEV):latest || true docker buildx rm $(ECR_NAME_DEV) || true @rm -rf .arch_tag diff --git a/README.md b/README.md index 5bb9956..3864c11 100644 --- a/README.md +++ b/README.md @@ -7,6 +7,8 @@ - To update dependencies: `make update` - To run unit tests: `make test` - To lint the repo: `make lint` +- To auto-fix lint issues: `make lint-fix` +- To check for security vulnerabilities: `make security` - To run the app: `uv run launcher --help` ## Overview diff --git a/pyproject.toml b/pyproject.toml index 83a01f8..2511f51 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -15,7 +15,6 @@ dependencies = [ [dependency-groups] dev = [ - "black>=25.1.0", "coveralls>=4.0.1", "ipython>=9.4.0", "mypy>=1.17.1", @@ -25,9 +24,6 @@ dev = [ "ruff>=0.12.8", ] -[tool.black] -line-length = 90 - [tool.mypy] disallow_untyped_calls = true disallow_untyped_defs = true @@ -50,6 +46,7 @@ select = ["ALL", "PT"] ignore = [ "C90", "COM812", + "CPY001", "D100", "D101", "D102", diff --git a/uv.lock b/uv.lock index 975aca5..a9382fd 100644 --- a/uv.lock +++ b/uv.lock @@ -1,52 +1,103 @@ version = 1 revision = 3 requires-python = ">=3.13" +resolution-markers = [ + "python_full_version >= '3.15'", + "python_full_version < '3.15'", +] [[package]] -name = "anyio" -version 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a/.github/pull-request-template.md +++ b/.github/pull-request-template.md @@ -15,16 +15,6 @@ YES | NO ### What are the relevant tickets? - Include links to Jira Software and/or Jira Service Management tickets here. -### Developer -- [ ] All new ENV is documented in README -- [ ] All new ENV has been added to staging and production environments -- [ ] All related Jira tickets are linked in commit message(s) -- [ ] Stakeholder approval has been confirmed (or is not needed) - -### Code Reviewer(s) -- [ ] The commit message is clear and follows our guidelines (not just this PR message) -- [ ] There are appropriate tests covering any new functionality -- [ ] The provided documentation is sufficient for understanding any new functionality introduced -- [ ] Any manual tests have been performed **or** provided examples verified -- [ ] New dependencies are appropriate or there were no changes +### Code review +* Code review best practices are documented [here](https://mitlibraries.github.io/guides/collaboration/code_review.html) and you are encouraged to have a constructive dialogue with your reviewers about their preferences and expectations.