|
| 1 | +package com.thealgorithms.streaming; |
| 2 | + |
| 3 | +/** |
| 4 | + * Online (single pass) mean and variance using <b>Welford's algorithm</b>. |
| 5 | + * |
| 6 | + * <p>The textbook formula {@code Var = (sum(x^2) - n * mean^2) / (n - 1)} is fast but numerically |
| 7 | + * treacherous: {@code sum(x^2)} and {@code n * mean^2} may be huge and nearly equal, so their |
| 8 | + * difference loses most of its significant digits and can even come out negative. Welford's |
| 9 | + * recurrence never forms those large intermediate values. It keeps only the running mean and the sum |
| 10 | + * of squared deviations from that running mean, {@code M2}: |
| 11 | + * |
| 12 | + * <pre> |
| 13 | + * n <- n + 1 |
| 14 | + * delta <- x - mean |
| 15 | + * mean <- mean + delta / n |
| 16 | + * M2 <- M2 + delta * (x - mean) // note: the second factor uses the *updated* mean |
| 17 | + * </pre> |
| 18 | + * |
| 19 | + * <p>Both {@link #add(double)} and {@link #remove(double)} run in O(1) time and the accumulator |
| 20 | + * occupies O(1) memory no matter how many samples pass through it. |
| 21 | + * |
| 22 | + * <h2>Sliding windows and map-reduce</h2> |
| 23 | + * |
| 24 | + * <ul> |
| 25 | + * <li>{@link #remove(double)} runs the recurrence backwards, which turns the accumulator into the |
| 26 | + * statistics of a sliding window: feed the incoming sample to {@code add} and the sample that |
| 27 | + * just left the window to {@code remove}. Removal is the one operation that can degrade |
| 28 | + * accuracy over a very long run, since the value being removed no longer matches the mean it |
| 29 | + * was added to; recreate the accumulator periodically if that matters.</li> |
| 30 | + * <li>{@link #merge(WelfordAlgorithm, WelfordAlgorithm)} implements Chan's parallel update, so |
| 31 | + * partial results computed on different shards can be combined exactly.</li> |
| 32 | + * </ul> |
| 33 | + * |
| 34 | + * <h2>Usage</h2> |
| 35 | + * |
| 36 | + * <pre>{@code |
| 37 | + * WelfordAlgorithm stats = new WelfordAlgorithm(); |
| 38 | + * stats.add(2.0); |
| 39 | + * stats.add(4.0); |
| 40 | + * stats.add(4.0); |
| 41 | + * stats.mean(); // 3.3333... |
| 42 | + * stats.populationStandardDeviation(); // 0.9428... |
| 43 | + * }</pre> |
| 44 | + * |
| 45 | + * <p>This class is not thread-safe. |
| 46 | + * |
| 47 | + * @see ExponentialMovingAverage |
| 48 | + * @see <a href="https://en.wikipedia.org/wiki/Algorithms_for_calculating_variance">Algorithms for calculating variance</a> |
| 49 | + */ |
| 50 | +public final class WelfordAlgorithm { |
| 51 | + |
| 52 | + private long count; |
| 53 | + private double mean; |
| 54 | + private double sumOfSquaredDeviations; |
| 55 | + |
| 56 | + /** |
| 57 | + * Creates an empty accumulator. |
| 58 | + */ |
| 59 | + public WelfordAlgorithm() { |
| 60 | + clear(); |
| 61 | + } |
| 62 | + |
| 63 | + /** |
| 64 | + * Incorporates one sample. |
| 65 | + * |
| 66 | + * @param value the sample to add |
| 67 | + * @throws IllegalArgumentException if {@code value} is NaN or infinite |
| 68 | + */ |
| 69 | + public void add(double value) { |
| 70 | + requireFinite(value); |
| 71 | + count++; |
| 72 | + double delta = value - mean; |
| 73 | + mean += delta / count; |
| 74 | + sumOfSquaredDeviations += delta * (value - mean); |
| 75 | + } |
| 76 | + |
| 77 | + /** |
| 78 | + * Incorporates every given sample, in order. |
| 79 | + * |
| 80 | + * @param values the samples to add |
| 81 | + * @throws IllegalArgumentException if any value is NaN or infinite |
| 82 | + * @throws NullPointerException if {@code values} is {@code null} |
| 83 | + */ |
| 84 | + public void addAll(double... values) { |
| 85 | + for (double value : values) { |
| 86 | + add(value); |
| 87 | + } |
| 88 | + } |
| 89 | + |
| 90 | + /** |
| 91 | + * Removes a previously added sample, reversing {@link #add(double)}. This is what makes the |
| 92 | + * accumulator usable for a sliding window. |
| 93 | + * |
| 94 | + * @param value the sample to remove; it must genuinely have been added before |
| 95 | + * @throws IllegalStateException if the accumulator is empty |
| 96 | + * @throws IllegalArgumentException if {@code value} is NaN or infinite |
| 97 | + */ |
| 98 | + public void remove(double value) { |
| 99 | + requireFinite(value); |
| 100 | + if (count == 0) { |
| 101 | + throw new IllegalStateException("Cannot remove a sample from an empty accumulator"); |
| 102 | + } |
| 103 | + if (count == 1) { |
| 104 | + clear(); |
| 105 | + return; |
| 106 | + } |
| 107 | + double previousMean = mean; |
| 108 | + mean = (count * mean - value) / (count - 1); |
| 109 | + sumOfSquaredDeviations -= (value - previousMean) * (value - mean); |
| 110 | + count--; |
| 111 | + if (sumOfSquaredDeviations < 0.0) { |
| 112 | + sumOfSquaredDeviations = 0.0; |
| 113 | + } |
| 114 | + } |
| 115 | + |
| 116 | + /** |
| 117 | + * Combines two independently accumulated summaries using Chan's parallel variance update. |
| 118 | + * |
| 119 | + * @param left summary of the first batch of samples |
| 120 | + * @param right summary of the second batch of samples |
| 121 | + * @return a new summary describing the concatenation of both batches |
| 122 | + * @throws NullPointerException if either argument is {@code null} |
| 123 | + */ |
| 124 | + public static WelfordAlgorithm merge(WelfordAlgorithm left, WelfordAlgorithm right) { |
| 125 | + WelfordAlgorithm merged = new WelfordAlgorithm(); |
| 126 | + merged.count = left.count + right.count; |
| 127 | + if (merged.count == 0) { |
| 128 | + return merged; |
| 129 | + } |
| 130 | + double delta = right.mean - left.mean; |
| 131 | + merged.mean = left.mean + delta * right.count / merged.count; |
| 132 | + merged.sumOfSquaredDeviations = left.sumOfSquaredDeviations + right.sumOfSquaredDeviations + delta * delta * left.count * right.count / merged.count; |
| 133 | + return merged; |
| 134 | + } |
| 135 | + |
| 136 | + /** |
| 137 | + * Returns the number of samples seen so far. |
| 138 | + * |
| 139 | + * @return the sample count |
| 140 | + */ |
| 141 | + public long count() { |
| 142 | + return count; |
| 143 | + } |
| 144 | + |
| 145 | + /** |
| 146 | + * Tells whether any sample has been added. |
| 147 | + * |
| 148 | + * @return {@code true} if no sample is currently accounted for |
| 149 | + */ |
| 150 | + public boolean isEmpty() { |
| 151 | + return count == 0; |
| 152 | + } |
| 153 | + |
| 154 | + /** |
| 155 | + * Returns the arithmetic mean of the samples. |
| 156 | + * |
| 157 | + * @return the mean, or {@link Double#NaN} if no sample has been added |
| 158 | + */ |
| 159 | + public double mean() { |
| 160 | + return count == 0 ? Double.NaN : mean; |
| 161 | + } |
| 162 | + |
| 163 | + /** |
| 164 | + * Returns the sum of the samples, reconstructed from the mean. |
| 165 | + * |
| 166 | + * @return {@code count * mean}, or {@code 0} if no sample has been added |
| 167 | + */ |
| 168 | + public double sum() { |
| 169 | + return count == 0 ? 0.0 : mean * count; |
| 170 | + } |
| 171 | + |
| 172 | + /** |
| 173 | + * Returns the sum of squared deviations from the mean, {@code M2}. |
| 174 | + * |
| 175 | + * @return the sum of squared deviations, {@code 0} for an empty accumulator |
| 176 | + */ |
| 177 | + public double sumOfSquaredDeviations() { |
| 178 | + return sumOfSquaredDeviations; |
| 179 | + } |
| 180 | + |
| 181 | + /** |
| 182 | + * Returns the unbiased sample variance, normalised by {@code count - 1}. |
| 183 | + * |
| 184 | + * @return the sample variance, or {@link Double#NaN} if fewer than two samples were added |
| 185 | + */ |
| 186 | + public double sampleVariance() { |
| 187 | + return count < 2 ? Double.NaN : sumOfSquaredDeviations / (count - 1); |
| 188 | + } |
| 189 | + |
| 190 | + /** |
| 191 | + * Returns the population variance, normalised by {@code count}. |
| 192 | + * |
| 193 | + * @return the population variance, or {@link Double#NaN} if no sample has been added |
| 194 | + */ |
| 195 | + public double populationVariance() { |
| 196 | + return count == 0 ? Double.NaN : sumOfSquaredDeviations / count; |
| 197 | + } |
| 198 | + |
| 199 | + /** |
| 200 | + * Returns the square root of {@link #sampleVariance()}. |
| 201 | + * |
| 202 | + * @return the sample standard deviation, or {@link Double#NaN} if fewer than two samples were added |
| 203 | + */ |
| 204 | + public double sampleStandardDeviation() { |
| 205 | + return Math.sqrt(sampleVariance()); |
| 206 | + } |
| 207 | + |
| 208 | + /** |
| 209 | + * Returns the square root of {@link #populationVariance()}. |
| 210 | + * |
| 211 | + * @return the population standard deviation, or {@link Double#NaN} if no sample has been added |
| 212 | + */ |
| 213 | + public double populationStandardDeviation() { |
| 214 | + return Math.sqrt(populationVariance()); |
| 215 | + } |
| 216 | + |
| 217 | + /** |
| 218 | + * Returns the standard error of the mean, {@code sampleStandardDeviation / sqrt(count)}. |
| 219 | + * |
| 220 | + * @return the standard error, or {@link Double#NaN} if fewer than two samples were added |
| 221 | + */ |
| 222 | + public double standardError() { |
| 223 | + return sampleStandardDeviation() / Math.sqrt(count); |
| 224 | + } |
| 225 | + |
| 226 | + /** |
| 227 | + * Forgets every sample. |
| 228 | + */ |
| 229 | + public void clear() { |
| 230 | + count = 0; |
| 231 | + mean = 0.0; |
| 232 | + sumOfSquaredDeviations = 0.0; |
| 233 | + } |
| 234 | + |
| 235 | + @Override |
| 236 | + public String toString() { |
| 237 | + return "WelfordAlgorithm{count=" + count + ", mean=" + mean() + ", sampleStandardDeviation=" + sampleStandardDeviation() + '}'; |
| 238 | + } |
| 239 | + |
| 240 | + private static void requireFinite(double value) { |
| 241 | + if (!Double.isFinite(value)) { |
| 242 | + throw new IllegalArgumentException("Samples must be finite, but was " + value); |
| 243 | + } |
| 244 | + } |
| 245 | +} |
0 commit comments