Error "format_2196" and "data_0916" not belonging to "format_1915" and "data_0006" respectively

[almanilsson]

Description

I get an error saying that "format_2196" does not belong to "format_1915" and "data_0916" does not belong to "data_0006", so APE does not run with the following inputs:

{
"format_1915": ["format_2196"],
"data_0006": ["data_0582"]
},
{
"format_1915": ["format_3475"],
"data_0006": ["data_0916"]
}

API/CLI Version

• API
• CLI

[vedran-kasalica]

If I understood correctly, this happened when the configuration uses "strict_tool_annotations": "true". APE trims the ontology to include only data types and formats that can be processed by the annotated tools and probably the mentioned type data_0916 and format format_2196 were not used in the tool annotations, i.e., the annotated tools cannot use them or create them. I will try to improve the documentation of the APE configuration fields and potentially change a bit the way strict_tool_annotations works.