diff --git a/pom.xml b/pom.xml
index c1c22b4..d333880 100644
--- a/pom.xml
+++ b/pom.xml
@@ -127,6 +127,12 @@
3.1.0
+
+
+ org.yaml
+ snakeyaml
+
+
diff --git a/src/main/java/nl/esciencecenter/controller/AlternativesController.java b/src/main/java/nl/esciencecenter/controller/AlternativesController.java
new file mode 100644
index 0000000..1c7d052
--- /dev/null
+++ b/src/main/java/nl/esciencecenter/controller/AlternativesController.java
@@ -0,0 +1,71 @@
+package nl.esciencecenter.controller;
+
+import java.io.IOException;
+
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.http.MediaType;
+import org.springframework.http.ResponseEntity;
+import org.springframework.web.bind.annotation.ExceptionHandler;
+import org.springframework.web.bind.annotation.PostMapping;
+import org.springframework.web.bind.annotation.RequestMapping;
+import org.springframework.web.bind.annotation.RequestParam;
+import org.springframework.web.bind.annotation.RestController;
+import org.springframework.web.multipart.MultipartFile;
+
+import io.swagger.v3.oas.annotations.Operation;
+import io.swagger.v3.oas.annotations.media.Content;
+import io.swagger.v3.oas.annotations.media.Schema;
+import io.swagger.v3.oas.annotations.responses.ApiResponse;
+import nl.esciencecenter.controller.dto.ParseResponse;
+import nl.esciencecenter.restape.CwlParser;
+import nl.esciencecenter.restape.EdamLabels;
+
+@RestController
+@RequestMapping("/alternatives")
+public class AlternativesController {
+
+ @Autowired
+ private EdamLabels edamLabels;
+
+ /**
+ * Parses a CWL v1.2 workflow and returns its DAG representation plus
+ * workflow-level I/O terms for use as APE synthesis constraints.
+ */
+ @PostMapping(value = "/parse", consumes = MediaType.MULTIPART_FORM_DATA_VALUE)
+ @Operation(
+ summary = "Parse a CWL workflow file",
+ description = "Accepts a CWL v1.2 Workflow file as multipart/form-data and returns a " +
+ "graph-optimised representation: tool nodes, data-flow edges, and the " +
+ "workflow-level input/output EDAM terms.",
+ tags = {"Alternatives"},
+ responses = {
+ @ApiResponse(responseCode = "200",
+ description = "Successful operation. Graph representation of the CWL workflow is returned.",
+ content = @Content(
+ schema = @Schema(implementation = ParseResponse.class),
+ mediaType = MediaType.APPLICATION_JSON_VALUE)),
+ @ApiResponse(responseCode = "400", description = "Invalid or unsupported CWL file")
+ })
+ public ResponseEntity parseCwl(
+ @RequestParam("cwl_file") MultipartFile cwlFile) throws IOException {
+ edamLabels.ensureLoaded();
+ ParseResponse response = CwlParser.parse(cwlFile.getInputStream(), edamLabels::resolve);
+ return ResponseEntity.ok().contentType(MediaType.APPLICATION_JSON).body(response);
+ }
+
+ @ExceptionHandler(IllegalArgumentException.class)
+ public ResponseEntity handleIllegalArgument(IllegalArgumentException e) {
+ return ResponseEntity.badRequest().body(e.getMessage());
+ }
+
+ @ExceptionHandler(IOException.class)
+ public ResponseEntity handleIOException(IOException e) {
+ return ResponseEntity.badRequest().body(e.getMessage());
+ }
+
+ @ExceptionHandler(Exception.class)
+ public ResponseEntity handleAny(Exception e) {
+ return ResponseEntity.internalServerError()
+ .body(e.getClass().getSimpleName() + ": " + e.getMessage());
+ }
+}
diff --git a/src/main/java/nl/esciencecenter/controller/dto/GraphEdge.java b/src/main/java/nl/esciencecenter/controller/dto/GraphEdge.java
new file mode 100644
index 0000000..c177f8d
--- /dev/null
+++ b/src/main/java/nl/esciencecenter/controller/dto/GraphEdge.java
@@ -0,0 +1,11 @@
+package nl.esciencecenter.controller.dto;
+
+import lombok.AllArgsConstructor;
+import lombok.Getter;
+
+@Getter
+@AllArgsConstructor
+public class GraphEdge {
+ private final String source;
+ private final String target;
+}
diff --git a/src/main/java/nl/esciencecenter/controller/dto/GraphNode.java b/src/main/java/nl/esciencecenter/controller/dto/GraphNode.java
new file mode 100644
index 0000000..a826440
--- /dev/null
+++ b/src/main/java/nl/esciencecenter/controller/dto/GraphNode.java
@@ -0,0 +1,21 @@
+package nl.esciencecenter.controller.dto;
+
+import lombok.AllArgsConstructor;
+import lombok.Getter;
+
+@Getter
+@AllArgsConstructor
+public class GraphNode {
+ private final String id;
+ private final String label;
+ private final NodeType type;
+
+ /**
+ * Kind of node in the workflow graph. Constants are lowercase so Jackson
+ * serialises them as {@code "input"}/{@code "tool"}/{@code "output"} for the
+ * frontend (matching the existing {@code ImageFormat} enum convention).
+ */
+ public enum NodeType {
+ input, tool, output
+ }
+}
diff --git a/src/main/java/nl/esciencecenter/controller/dto/ParseResponse.java b/src/main/java/nl/esciencecenter/controller/dto/ParseResponse.java
new file mode 100644
index 0000000..7f05eef
--- /dev/null
+++ b/src/main/java/nl/esciencecenter/controller/dto/ParseResponse.java
@@ -0,0 +1,15 @@
+package nl.esciencecenter.controller.dto;
+
+import java.util.List;
+
+import lombok.AllArgsConstructor;
+import lombok.Getter;
+
+@Getter
+@AllArgsConstructor
+public class ParseResponse {
+ private final List nodes;
+ private final List edges;
+ private final List inputs;
+ private final List outputs;
+}
diff --git a/src/main/java/nl/esciencecenter/controller/dto/TaxonomyElem.java b/src/main/java/nl/esciencecenter/controller/dto/TaxonomyElem.java
index 009cfa7..1521c7b 100644
--- a/src/main/java/nl/esciencecenter/controller/dto/TaxonomyElem.java
+++ b/src/main/java/nl/esciencecenter/controller/dto/TaxonomyElem.java
@@ -1,16 +1,18 @@
package nl.esciencecenter.controller.dto;
+import com.fasterxml.jackson.annotation.JsonInclude;
+
import lombok.AllArgsConstructor;
import lombok.NoArgsConstructor;
/**
* This class represents a single element of the taxonomy.
- * TODO: This class is not used at the moment, but it is a good idea to use it
- * in the future.
- *
+ * Used for taxonomy tree responses as well as for the flat input/output EDAM
+ * terms of a parsed workflow, where only {@code id} and {@code label} are set.
*/
@NoArgsConstructor
@AllArgsConstructor
+@JsonInclude(JsonInclude.Include.NON_NULL)
public class TaxonomyElem {
public String id;
public String label;
diff --git a/src/main/java/nl/esciencecenter/restape/CwlParser.java b/src/main/java/nl/esciencecenter/restape/CwlParser.java
new file mode 100644
index 0000000..8afebd2
--- /dev/null
+++ b/src/main/java/nl/esciencecenter/restape/CwlParser.java
@@ -0,0 +1,178 @@
+package nl.esciencecenter.restape;
+
+import java.io.IOException;
+import java.io.InputStream;
+import java.util.ArrayList;
+import java.util.LinkedHashMap;
+import java.util.LinkedHashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+import java.util.function.UnaryOperator;
+
+import org.yaml.snakeyaml.LoaderOptions;
+import org.yaml.snakeyaml.Yaml;
+import org.yaml.snakeyaml.constructor.SafeConstructor;
+
+import nl.esciencecenter.controller.dto.GraphEdge;
+import nl.esciencecenter.controller.dto.GraphNode;
+import nl.esciencecenter.controller.dto.ParseResponse;
+import nl.esciencecenter.controller.dto.TaxonomyElem;
+
+/**
+ * Transforms a CWL v1.2 Workflow document into the graph-optimised ParseResponse.
+ */
+public class CwlParser {
+
+ private CwlParser() {}
+
+ /**
+ * Parses a CWL v1.2 Workflow from the given stream and returns the full DAG
+ * including input and output data nodes.
+ *
+ * @throws IllegalArgumentException if the document fails validation or is structurally incomplete
+ * @throws IOException if the stream cannot be read
+ */
+ @SuppressWarnings("unchecked")
+ public static ParseResponse parse(InputStream inputStream, UnaryOperator labelResolver) throws IOException {
+ Yaml yaml = new Yaml(new SafeConstructor(new LoaderOptions()));
+ Map cwl;
+ try {
+ cwl = yaml.load(inputStream);
+ } catch (Exception e) {
+ throw new IllegalArgumentException("CWL file could not be parsed as YAML: " + e.getMessage());
+ }
+ if (cwl == null) {
+ throw new IllegalArgumentException("CWL file is empty.");
+ }
+
+ // Step 1 – Validate
+ validateMetadata(cwl);
+
+ Map inputsSection = (Map) cwl.get("inputs");
+ Map stepsSection = (Map) cwl.get("steps");
+ Map outputsSection = (Map) cwl.get("outputs");
+
+ if (stepsSection == null || stepsSection.isEmpty()) {
+ throw new IllegalArgumentException("CWL Workflow must contain a non-empty 'steps' section.");
+ }
+
+ List nodes = new ArrayList<>();
+ List edges = new ArrayList<>();
+ Set seen = new LinkedHashSet<>();
+
+ // Step 2a – Input nodes (dagre places them at the top in TB layout)
+ Set inputIds = new LinkedHashSet<>();
+ if (inputsSection != null) {
+ for (Map.Entry entry : inputsSection.entrySet()) {
+ String id = entry.getKey();
+ String label = formatLabel(entry.getValue(), id, labelResolver);
+ nodes.add(new GraphNode(id, label, GraphNode.NodeType.input));
+ inputIds.add(id);
+ }
+ }
+
+ // Step 2b – Tool nodes
+ Set stepIds = stepsSection.keySet();
+ for (String stepId : stepIds) {
+ nodes.add(new GraphNode(stepId, toolLabel(stepId), GraphNode.NodeType.tool));
+ }
+
+ // Step 2c – Output nodes + remember which step feeds each output
+ Map outputSources = new LinkedHashMap<>();
+ if (outputsSection != null) {
+ for (Map.Entry entry : outputsSection.entrySet()) {
+ String id = entry.getKey();
+ String label = formatLabel(entry.getValue(), id, labelResolver);
+ nodes.add(new GraphNode(id, label, GraphNode.NodeType.output));
+
+ if (entry.getValue() instanceof Map def) {
+ String src = (String) ((Map) def).get("outputSource");
+ if (src != null && src.contains("/")) {
+ String sourceStepId = src.substring(0, src.indexOf('/'));
+ if (stepIds.contains(sourceStepId)) {
+ outputSources.put(id, sourceStepId);
+ }
+ }
+ }
+ }
+ }
+
+ // Step 3 – Edges
+ for (String targetId : stepIds) {
+ Object inField = ((Map) stepsSection.get(targetId)).get("in");
+ if (!(inField instanceof Map rawIn)) continue;
+
+ for (Object sourceRef : ((Map) rawIn).values()) {
+ if (!(sourceRef instanceof String ref)) continue;
+
+ if (ref.contains("/")) {
+ // Tool → Tool
+ String sourceId = ref.substring(0, ref.indexOf('/'));
+ if (stepIds.contains(sourceId) && seen.add(sourceId + "->" + targetId)) {
+ edges.add(new GraphEdge(sourceId, targetId));
+ }
+ } else if (inputIds.contains(ref) && seen.add(ref + "->" + targetId)) {
+ // Input → Tool
+ edges.add(new GraphEdge(ref, targetId));
+ }
+ }
+ }
+
+ // Tool → Output
+ outputSources.forEach((outputId, sourceId) ->
+ edges.add(new GraphEdge(sourceId, outputId)));
+
+ // Step 4 – EDAM tuples for APE synthesis constraints
+ List inputs = extractTuples(inputsSection, labelResolver);
+ List outputs = extractTuples(outputsSection, labelResolver);
+
+ return new ParseResponse(nodes, edges, inputs, outputs);
+ }
+
+ private static void validateMetadata(Map cwl) {
+ String cwlClass = (String) cwl.get("class");
+ String cwlVersion = (String) cwl.get("cwlVersion");
+ if (!"Workflow".equals(cwlClass)) {
+ throw new IllegalArgumentException(
+ "CWL file must declare 'class: Workflow', found: " + cwlClass);
+ }
+ if (!"v1.2".equals(cwlVersion)) {
+ throw new IllegalArgumentException(
+ "CWL file must declare 'cwlVersion: v1.2', found: " + cwlVersion);
+ }
+ }
+
+ /** Strips the APE-generated numeric suffix (e.g. MSFragger_01 → MSFragger). */
+ private static String toolLabel(String stepId) {
+ return stepId.replaceAll("_\\d+$", "");
+ }
+
+ /**
+ * Resolves the EDAM format URI from an inputs/outputs entry to a human-readable label.
+ * Falls back to the port ID when no format is declared.
+ */
+ @SuppressWarnings("unchecked")
+ private static String formatLabel(Object entry, String fallbackId, UnaryOperator resolver) {
+ if (entry instanceof Map def) {
+ String uri = (String) ((Map) def).get("format");
+ if (uri != null && !uri.isBlank()) {
+ return resolver.apply(uri);
+ }
+ }
+ return fallbackId;
+ }
+
+ @SuppressWarnings("unchecked")
+ private static List extractTuples(Map section, UnaryOperator resolver) {
+ List tuples = new ArrayList<>();
+ if (section == null) return tuples;
+ for (Map.Entry entry : section.entrySet()) {
+ if (!(entry.getValue() instanceof Map def)) continue;
+ String uri = (String) ((Map) def).get("format");
+ if (uri == null) continue;
+ tuples.add(new TaxonomyElem(uri, resolver.apply(uri), null, null));
+ }
+ return tuples;
+ }
+}
diff --git a/src/main/java/nl/esciencecenter/restape/EdamLabels.java b/src/main/java/nl/esciencecenter/restape/EdamLabels.java
new file mode 100644
index 0000000..420205e
--- /dev/null
+++ b/src/main/java/nl/esciencecenter/restape/EdamLabels.java
@@ -0,0 +1,54 @@
+package nl.esciencecenter.restape;
+
+import com.fasterxml.jackson.core.type.TypeReference;
+import com.fasterxml.jackson.databind.ObjectMapper;
+import org.springframework.stereotype.Component;
+
+import java.io.InputStream;
+import java.util.Collections;
+import java.util.HashMap;
+import java.util.Map;
+
+/**
+ * Resolves EDAM URIs to human-readable labels via a pre-generated static index.
+ *
+ * The index (edam_labels.json) is bundled as a classpath resource and was generated
+ * once from the EDAM OWL file. Lookups are O(1) after the first call to
+ * {@link #ensureLoaded()}.
+ */
+@Component
+public class EdamLabels {
+
+ private volatile Map labels = null;
+
+ /**
+ * Loads the static label index if not already done. Thread-safe; subsequent
+ * calls return immediately.
+ */
+ public synchronized void ensureLoaded() {
+ if (labels != null) return;
+ try (InputStream is = getClass().getClassLoader()
+ .getResourceAsStream("edam_labels.json")) {
+ if (is == null) throw new IllegalStateException("edam_labels.json not found on classpath");
+ Map map = new ObjectMapper()
+ .readValue(is, new TypeReference>() {});
+ labels = Collections.unmodifiableMap(map);
+ } catch (Exception e) {
+ throw new IllegalStateException("Failed to load edam_labels.json: " + e.getMessage(), e);
+ }
+ }
+
+ public String resolve(String uri) {
+ if (uri == null || uri.isBlank()) return "";
+ Map map = labels;
+ if (map == null) return shortForm(uri);
+ return map.getOrDefault(uri, shortForm(uri));
+ }
+
+ static String shortForm(String uri) {
+ if (uri == null || uri.isBlank()) return "";
+ int slash = uri.lastIndexOf('/');
+ int hash = uri.lastIndexOf('#');
+ return uri.substring(Math.max(slash, hash) + 1);
+ }
+}
diff --git a/src/main/resources/edam_labels.json b/src/main/resources/edam_labels.json
new file mode 100644
index 0000000..e41883f
--- /dev/null
+++ b/src/main/resources/edam_labels.json
@@ -0,0 +1,3474 @@
+{
+ "http://edamontology.org/data_0005": "Resource type",
+ "http://edamontology.org/data_0006": "Data",
+ "http://edamontology.org/data_0007": "Tool",
+ "http://edamontology.org/data_0581": "Database",
+ "http://edamontology.org/data_0582": "Ontology",
+ "http://edamontology.org/data_0583": "Directory metadata",
+ "http://edamontology.org/data_0831": "MeSH vocabulary",
+ "http://edamontology.org/data_0832": "HGNC vocabulary",
+ "http://edamontology.org/data_0835": "UMLS vocabulary",
+ "http://edamontology.org/data_0842": "Identifier",
+ "http://edamontology.org/data_0843": "Database entry",
+ "http://edamontology.org/data_0844": "Molecular mass",
+ "http://edamontology.org/data_0845": "Molecular charge",
+ "http://edamontology.org/data_0846": "Chemical formula",
+ "http://edamontology.org/data_0847": "QSAR descriptor",
+ "http://edamontology.org/data_0848": "Raw sequence",
+ "http://edamontology.org/data_0849": "Sequence record",
+ "http://edamontology.org/data_0850": "Sequence set",
+ "http://edamontology.org/data_0851": "Sequence mask character",
+ "http://edamontology.org/data_0852": "Sequence mask type",
+ "http://edamontology.org/data_0853": "DNA sense specification",
+ "http://edamontology.org/data_0854": "Sequence length specification",
+ "http://edamontology.org/data_0855": "Sequence metadata",
+ "http://edamontology.org/data_0856": "Sequence feature source",
+ "http://edamontology.org/data_0857": "Sequence search results",
+ "http://edamontology.org/data_0858": "Sequence signature matches",
+ "http://edamontology.org/data_0859": "Sequence signature model",
+ "http://edamontology.org/data_0860": "Sequence signature data",
+ "http://edamontology.org/data_0861": "Sequence alignment (words)",
+ "http://edamontology.org/data_0862": "Dotplot",
+ "http://edamontology.org/data_0863": "Sequence alignment",
+ "http://edamontology.org/data_0864": "Sequence alignment parameter",
+ "http://edamontology.org/data_0865": "Sequence similarity score",
+ "http://edamontology.org/data_0866": "Sequence alignment metadata",
+ "http://edamontology.org/data_0867": "Sequence alignment report",
+ "http://edamontology.org/data_0868": "Profile-profile alignment",
+ "http://edamontology.org/data_0869": "Sequence-profile alignment",
+ "http://edamontology.org/data_0870": "Sequence distance matrix",
+ "http://edamontology.org/data_0871": "Phylogenetic character data",
+ "http://edamontology.org/data_0872": "Phylogenetic tree",
+ "http://edamontology.org/data_0874": "Comparison matrix",
+ "http://edamontology.org/data_0875": "Protein topology",
+ "http://edamontology.org/data_0876": "Protein features report (secondary structure)",
+ "http://edamontology.org/data_0877": "Protein features report (super-secondary)",
+ "http://edamontology.org/data_0878": "Protein secondary structure alignment",
+ "http://edamontology.org/data_0879": "Secondary structure alignment metadata (protein)",
+ "http://edamontology.org/data_0880": "RNA secondary structure",
+ "http://edamontology.org/data_0881": "RNA secondary structure alignment",
+ "http://edamontology.org/data_0882": "Secondary structure alignment metadata (RNA)",
+ "http://edamontology.org/data_0883": "Structure",
+ "http://edamontology.org/data_0884": "Tertiary structure record",
+ "http://edamontology.org/data_0885": "Structure database search results",
+ "http://edamontology.org/data_0886": "Structure alignment",
+ "http://edamontology.org/data_0887": "Structure alignment report",
+ "http://edamontology.org/data_0888": "Structure similarity score",
+ "http://edamontology.org/data_0889": "Structural profile",
+ "http://edamontology.org/data_0890": "Structural (3D) profile alignment",
+ "http://edamontology.org/data_0891": "Sequence-3D profile alignment",
+ "http://edamontology.org/data_0892": "Protein sequence-structure scoring matrix",
+ "http://edamontology.org/data_0893": "Sequence-structure alignment",
+ "http://edamontology.org/data_0894": "Amino acid annotation",
+ "http://edamontology.org/data_0895": "Peptide annotation",
+ "http://edamontology.org/data_0896": "Protein report",
+ "http://edamontology.org/data_0897": "Protein property",
+ "http://edamontology.org/data_0899": "Protein structural motifs and surfaces",
+ "http://edamontology.org/data_0900": "Protein domain classification",
+ "http://edamontology.org/data_0901": "Protein features report (domains)",
+ "http://edamontology.org/data_0902": "Protein architecture report",
+ "http://edamontology.org/data_0903": "Protein folding report",
+ "http://edamontology.org/data_0904": "Protein features (mutation)",
+ "http://edamontology.org/data_0905": "Protein interaction raw data",
+ "http://edamontology.org/data_0906": "Protein interaction data",
+ "http://edamontology.org/data_0907": "Protein family report",
+ "http://edamontology.org/data_0909": "Vmax",
+ "http://edamontology.org/data_0910": "Km",
+ "http://edamontology.org/data_0911": "Nucleotide base annotation",
+ "http://edamontology.org/data_0912": "Nucleic acid property",
+ "http://edamontology.org/data_0914": "Codon usage data",
+ "http://edamontology.org/data_0916": "Gene report",
+ "http://edamontology.org/data_0917": "Gene classification",
+ "http://edamontology.org/data_0918": "DNA variation",
+ "http://edamontology.org/data_0919": "Chromosome report",
+ "http://edamontology.org/data_0920": "Genotype/phenotype report",
+ "http://edamontology.org/data_0923": "PCR experiment report",
+ "http://edamontology.org/data_0924": "Sequence trace",
+ "http://edamontology.org/data_0925": "Sequence assembly",
+ "http://edamontology.org/data_0926": "RH scores",
+ "http://edamontology.org/data_0927": "Genetic linkage report",
+ "http://edamontology.org/data_0928": "Gene expression profile",
+ "http://edamontology.org/data_0931": "Microarray experiment report",
+ "http://edamontology.org/data_0932": "Oligonucleotide probe data",
+ "http://edamontology.org/data_0933": "SAGE experimental data",
+ "http://edamontology.org/data_0934": "MPSS experimental data",
+ "http://edamontology.org/data_0935": "SBS experimental data",
+ "http://edamontology.org/data_0936": "Sequence tag profile (with gene assignment)",
+ "http://edamontology.org/data_0937": "Electron density map",
+ "http://edamontology.org/data_0938": "Raw NMR data",
+ "http://edamontology.org/data_0939": "CD spectra",
+ "http://edamontology.org/data_0940": "Volume map",
+ "http://edamontology.org/data_0941": "Electron microscopy model",
+ "http://edamontology.org/data_0942": "2D PAGE image",
+ "http://edamontology.org/data_0943": "Mass spectrum",
+ "http://edamontology.org/data_0944": "Peptide mass fingerprint",
+ "http://edamontology.org/data_0945": "Peptide identification",
+ "http://edamontology.org/data_0946": "Pathway or network annotation",
+ "http://edamontology.org/data_0947": "Biological pathway map",
+ "http://edamontology.org/data_0948": "Data resource definition",
+ "http://edamontology.org/data_0949": "Workflow metadata",
+ "http://edamontology.org/data_0950": "Mathematical model",
+ "http://edamontology.org/data_0951": "Statistical estimate score",
+ "http://edamontology.org/data_0952": "EMBOSS database resource definition",
+ "http://edamontology.org/data_0953": "Version information",
+ "http://edamontology.org/data_0954": "Database cross-mapping",
+ "http://edamontology.org/data_0955": "Data index",
+ "http://edamontology.org/data_0956": "Data index report",
+ "http://edamontology.org/data_0957": "Database metadata",
+ "http://edamontology.org/data_0958": "Tool metadata",
+ "http://edamontology.org/data_0959": "Job metadata",
+ "http://edamontology.org/data_0960": "User metadata",
+ "http://edamontology.org/data_0962": "Small molecule report",
+ "http://edamontology.org/data_0963": "Cell line report",
+ "http://edamontology.org/data_0964": "Scent annotation",
+ "http://edamontology.org/data_0966": "Ontology term",
+ "http://edamontology.org/data_0967": "Ontology concept data",
+ "http://edamontology.org/data_0968": "Keyword",
+ "http://edamontology.org/data_0970": "Citation",
+ "http://edamontology.org/data_0971": "Article",
+ "http://edamontology.org/data_0972": "Text mining report",
+ "http://edamontology.org/data_0974": "Entity identifier",
+ "http://edamontology.org/data_0975": "Data resource identifier",
+ "http://edamontology.org/data_0976": "Identifier (by type of data)",
+ "http://edamontology.org/data_0977": "Tool identifier",
+ "http://edamontology.org/data_0978": "Discrete entity identifier",
+ "http://edamontology.org/data_0979": "Entity feature identifier",
+ "http://edamontology.org/data_0980": "Entity collection identifier",
+ "http://edamontology.org/data_0981": "Phenomenon identifier",
+ "http://edamontology.org/data_0982": "Molecule identifier",
+ "http://edamontology.org/data_0983": "Atom ID",
+ "http://edamontology.org/data_0984": "Molecule name",
+ "http://edamontology.org/data_0985": "Molecule type",
+ "http://edamontology.org/data_0986": "Chemical identifier",
+ "http://edamontology.org/data_0987": "Chromosome name",
+ "http://edamontology.org/data_0988": "Peptide identifier",
+ "http://edamontology.org/data_0989": "Protein identifier",
+ "http://edamontology.org/data_0990": "Compound name",
+ "http://edamontology.org/data_0991": "Chemical registry number",
+ "http://edamontology.org/data_0992": "Ligand identifier",
+ "http://edamontology.org/data_0993": "Drug identifier",
+ "http://edamontology.org/data_0994": "Amino acid identifier",
+ "http://edamontology.org/data_0995": "Nucleotide identifier",
+ "http://edamontology.org/data_0996": "Monosaccharide identifier",
+ "http://edamontology.org/data_0997": "Chemical name (ChEBI)",
+ "http://edamontology.org/data_0998": "Chemical name (IUPAC)",
+ "http://edamontology.org/data_0999": "Chemical name (INN)",
+ "http://edamontology.org/data_1000": "Chemical name (brand)",
+ "http://edamontology.org/data_1001": "Chemical name (synonymous)",
+ "http://edamontology.org/data_1002": "CAS number",
+ "http://edamontology.org/data_1003": "Chemical registry number (Beilstein)",
+ "http://edamontology.org/data_1004": "Chemical registry number (Gmelin)",
+ "http://edamontology.org/data_1005": "HET group name",
+ "http://edamontology.org/data_1006": "Amino acid name",
+ "http://edamontology.org/data_1007": "Nucleotide code",
+ "http://edamontology.org/data_1008": "Polypeptide chain ID",
+ "http://edamontology.org/data_1009": "Protein name",
+ "http://edamontology.org/data_1010": "Enzyme identifier",
+ "http://edamontology.org/data_1011": "EC number",
+ "http://edamontology.org/data_1012": "Enzyme name",
+ "http://edamontology.org/data_1013": "Restriction enzyme name",
+ "http://edamontology.org/data_1014": "Sequence position specification",
+ "http://edamontology.org/data_1015": "Sequence feature ID",
+ "http://edamontology.org/data_1016": "Sequence position",
+ "http://edamontology.org/data_1017": "Sequence range",
+ "http://edamontology.org/data_1018": "Nucleic acid feature identifier",
+ "http://edamontology.org/data_1019": "Protein feature identifier",
+ "http://edamontology.org/data_1020": "Sequence feature key",
+ "http://edamontology.org/data_1021": "Sequence feature qualifier",
+ "http://edamontology.org/data_1022": "Sequence feature label",
+ "http://edamontology.org/data_1023": "EMBOSS Uniform Feature Object",
+ "http://edamontology.org/data_1024": "Codon name",
+ "http://edamontology.org/data_1025": "Gene identifier",
+ "http://edamontology.org/data_1026": "Gene symbol",
+ "http://edamontology.org/data_1027": "Gene ID (NCBI)",
+ "http://edamontology.org/data_1028": "Gene identifier (NCBI RefSeq)",
+ "http://edamontology.org/data_1029": "Gene identifier (NCBI UniGene)",
+ "http://edamontology.org/data_1030": "Gene identifier (Entrez)",
+ "http://edamontology.org/data_1031": "Gene ID (CGD)",
+ "http://edamontology.org/data_1032": "Gene ID (DictyBase)",
+ "http://edamontology.org/data_1033": "Ensembl gene ID",
+ "http://edamontology.org/data_1034": "Gene ID (SGD)",
+ "http://edamontology.org/data_1035": "Gene ID (GeneDB)",
+ "http://edamontology.org/data_1036": "TIGR identifier",
+ "http://edamontology.org/data_1037": "TAIR accession (gene)",
+ "http://edamontology.org/data_1038": "Protein domain ID",
+ "http://edamontology.org/data_1039": "SCOP domain identifier",
+ "http://edamontology.org/data_1040": "CATH domain ID",
+ "http://edamontology.org/data_1041": "SCOP concise classification string (sccs)",
+ "http://edamontology.org/data_1042": "SCOP sunid",
+ "http://edamontology.org/data_1043": "CATH node ID",
+ "http://edamontology.org/data_1044": "Kingdom name",
+ "http://edamontology.org/data_1045": "Species name",
+ "http://edamontology.org/data_1046": "Strain name",
+ "http://edamontology.org/data_1047": "URI",
+ "http://edamontology.org/data_1048": "Database ID",
+ "http://edamontology.org/data_1049": "Directory name",
+ "http://edamontology.org/data_1050": "File name",
+ "http://edamontology.org/data_1051": "Ontology name",
+ "http://edamontology.org/data_1052": "URL",
+ "http://edamontology.org/data_1053": "URN",
+ "http://edamontology.org/data_1055": "LSID",
+ "http://edamontology.org/data_1056": "Database name",
+ "http://edamontology.org/data_1057": "Sequence database name",
+ "http://edamontology.org/data_1058": "Enumerated file name",
+ "http://edamontology.org/data_1059": "File name extension",
+ "http://edamontology.org/data_1060": "File base name",
+ "http://edamontology.org/data_1061": "QSAR descriptor name",
+ "http://edamontology.org/data_1062": "Database entry identifier",
+ "http://edamontology.org/data_1063": "Sequence identifier",
+ "http://edamontology.org/data_1064": "Sequence set ID",
+ "http://edamontology.org/data_1065": "Sequence signature identifier",
+ "http://edamontology.org/data_1066": "Sequence alignment ID",
+ "http://edamontology.org/data_1067": "Phylogenetic distance matrix identifier",
+ "http://edamontology.org/data_1068": "Phylogenetic tree ID",
+ "http://edamontology.org/data_1069": "Comparison matrix identifier",
+ "http://edamontology.org/data_1070": "Structure ID",
+ "http://edamontology.org/data_1071": "Structural (3D) profile ID",
+ "http://edamontology.org/data_1072": "Structure alignment ID",
+ "http://edamontology.org/data_1073": "Amino acid index ID",
+ "http://edamontology.org/data_1074": "Protein interaction ID",
+ "http://edamontology.org/data_1075": "Protein family identifier",
+ "http://edamontology.org/data_1076": "Codon usage table name",
+ "http://edamontology.org/data_1077": "Transcription factor identifier",
+ "http://edamontology.org/data_1078": "Experiment annotation ID",
+ "http://edamontology.org/data_1079": "Electron microscopy model ID",
+ "http://edamontology.org/data_1080": "Gene expression report ID",
+ "http://edamontology.org/data_1081": "Genotype and phenotype annotation ID",
+ "http://edamontology.org/data_1082": "Pathway or network identifier",
+ "http://edamontology.org/data_1083": "Workflow ID",
+ "http://edamontology.org/data_1084": "Data resource definition ID",
+ "http://edamontology.org/data_1085": "Biological model ID",
+ "http://edamontology.org/data_1086": "Compound identifier",
+ "http://edamontology.org/data_1087": "Ontology concept ID",
+ "http://edamontology.org/data_1088": "Article ID",
+ "http://edamontology.org/data_1089": "FlyBase ID",
+ "http://edamontology.org/data_1091": "WormBase name",
+ "http://edamontology.org/data_1092": "WormBase class",
+ "http://edamontology.org/data_1093": "Sequence accession",
+ "http://edamontology.org/data_1094": "Sequence type",
+ "http://edamontology.org/data_1095": "EMBOSS Uniform Sequence Address",
+ "http://edamontology.org/data_1096": "Sequence accession (protein)",
+ "http://edamontology.org/data_1097": "Sequence accession (nucleic acid)",
+ "http://edamontology.org/data_1098": "RefSeq accession",
+ "http://edamontology.org/data_1099": "UniProt accession (extended)",
+ "http://edamontology.org/data_1100": "PIR identifier",
+ "http://edamontology.org/data_1101": "TREMBL accession",
+ "http://edamontology.org/data_1102": "Gramene primary identifier",
+ "http://edamontology.org/data_1103": "EMBL/GenBank/DDBJ ID",
+ "http://edamontology.org/data_1104": "Sequence cluster ID (UniGene)",
+ "http://edamontology.org/data_1105": "dbEST accession",
+ "http://edamontology.org/data_1106": "dbSNP ID",
+ "http://edamontology.org/data_1110": "EMBOSS sequence type",
+ "http://edamontology.org/data_1111": "EMBOSS listfile",
+ "http://edamontology.org/data_1112": "Sequence cluster ID",
+ "http://edamontology.org/data_1113": "Sequence cluster ID (COG)",
+ "http://edamontology.org/data_1114": "Sequence motif identifier",
+ "http://edamontology.org/data_1115": "Sequence profile ID",
+ "http://edamontology.org/data_1116": "ELM ID",
+ "http://edamontology.org/data_1117": "Prosite accession number",
+ "http://edamontology.org/data_1118": "HMMER hidden Markov model ID",
+ "http://edamontology.org/data_1119": "JASPAR profile ID",
+ "http://edamontology.org/data_1120": "Sequence alignment type",
+ "http://edamontology.org/data_1121": "BLAST sequence alignment type",
+ "http://edamontology.org/data_1122": "Phylogenetic tree type",
+ "http://edamontology.org/data_1123": "TreeBASE study accession number",
+ "http://edamontology.org/data_1124": "TreeFam accession number",
+ "http://edamontology.org/data_1125": "Comparison matrix type",
+ "http://edamontology.org/data_1126": "Comparison matrix name",
+ "http://edamontology.org/data_1127": "PDB ID",
+ "http://edamontology.org/data_1128": "AAindex ID",
+ "http://edamontology.org/data_1129": "BIND accession number",
+ "http://edamontology.org/data_1130": "IntAct accession number",
+ "http://edamontology.org/data_1131": "Protein family name",
+ "http://edamontology.org/data_1132": "InterPro entry name",
+ "http://edamontology.org/data_1133": "InterPro accession",
+ "http://edamontology.org/data_1134": "InterPro secondary accession",
+ "http://edamontology.org/data_1135": "Gene3D ID",
+ "http://edamontology.org/data_1136": "PIRSF ID",
+ "http://edamontology.org/data_1137": "PRINTS code",
+ "http://edamontology.org/data_1138": "Pfam accession number",
+ "http://edamontology.org/data_1139": "SMART accession number",
+ "http://edamontology.org/data_1140": "Superfamily hidden Markov model number",
+ "http://edamontology.org/data_1141": "TIGRFam ID",
+ "http://edamontology.org/data_1142": "ProDom accession number",
+ "http://edamontology.org/data_1143": "TRANSFAC accession number",
+ "http://edamontology.org/data_1144": "ArrayExpress accession number",
+ "http://edamontology.org/data_1145": "PRIDE experiment accession number",
+ "http://edamontology.org/data_1146": "EMDB ID",
+ "http://edamontology.org/data_1147": "GEO accession number",
+ "http://edamontology.org/data_1148": "GermOnline ID",
+ "http://edamontology.org/data_1149": "EMAGE ID",
+ "http://edamontology.org/data_1150": "Disease ID",
+ "http://edamontology.org/data_1151": "HGVbase ID",
+ "http://edamontology.org/data_1152": "HIVDB identifier",
+ "http://edamontology.org/data_1153": "OMIM ID",
+ "http://edamontology.org/data_1154": "KEGG object identifier",
+ "http://edamontology.org/data_1155": "Pathway ID (reactome)",
+ "http://edamontology.org/data_1156": "Pathway ID (aMAZE)",
+ "http://edamontology.org/data_1157": "Pathway ID (BioCyc)",
+ "http://edamontology.org/data_1158": "Pathway ID (INOH)",
+ "http://edamontology.org/data_1159": "Pathway ID (PATIKA)",
+ "http://edamontology.org/data_1160": "Pathway ID (CPDB)",
+ "http://edamontology.org/data_1161": "Pathway ID (Panther)",
+ "http://edamontology.org/data_1162": "MIRIAM identifier",
+ "http://edamontology.org/data_1163": "MIRIAM data type name",
+ "http://edamontology.org/data_1164": "MIRIAM URI",
+ "http://edamontology.org/data_1165": "MIRIAM data type primary name",
+ "http://edamontology.org/data_1166": "MIRIAM data type synonymous name",
+ "http://edamontology.org/data_1167": "Taverna workflow ID",
+ "http://edamontology.org/data_1170": "Biological model name",
+ "http://edamontology.org/data_1171": "BioModel ID",
+ "http://edamontology.org/data_1172": "PubChem CID",
+ "http://edamontology.org/data_1173": "ChemSpider ID",
+ "http://edamontology.org/data_1174": "ChEBI ID",
+ "http://edamontology.org/data_1175": "BioPax concept ID",
+ "http://edamontology.org/data_1176": "GO concept ID",
+ "http://edamontology.org/data_1177": "MeSH concept ID",
+ "http://edamontology.org/data_1178": "HGNC concept ID",
+ "http://edamontology.org/data_1179": "NCBI taxonomy ID",
+ "http://edamontology.org/data_1180": "Plant Ontology concept ID",
+ "http://edamontology.org/data_1181": "UMLS concept ID",
+ "http://edamontology.org/data_1182": "FMA concept ID",
+ "http://edamontology.org/data_1183": "EMAP concept ID",
+ "http://edamontology.org/data_1184": "ChEBI concept ID",
+ "http://edamontology.org/data_1185": "MGED concept ID",
+ "http://edamontology.org/data_1186": "myGrid concept ID",
+ "http://edamontology.org/data_1187": "PubMed ID",
+ "http://edamontology.org/data_1188": "DOI",
+ "http://edamontology.org/data_1189": "Medline UI",
+ "http://edamontology.org/data_1190": "Tool name",
+ "http://edamontology.org/data_1191": "Tool name (signature)",
+ "http://edamontology.org/data_1192": "Tool name (BLAST)",
+ "http://edamontology.org/data_1193": "Tool name (FASTA)",
+ "http://edamontology.org/data_1194": "Tool name (EMBOSS)",
+ "http://edamontology.org/data_1195": "Tool name (EMBASSY package)",
+ "http://edamontology.org/data_1201": "QSAR descriptor (constitutional)",
+ "http://edamontology.org/data_1202": "QSAR descriptor (electronic)",
+ "http://edamontology.org/data_1203": "QSAR descriptor (geometrical)",
+ "http://edamontology.org/data_1204": "QSAR descriptor (topological)",
+ "http://edamontology.org/data_1205": "QSAR descriptor (molecular)",
+ "http://edamontology.org/data_1233": "Sequence set (protein)",
+ "http://edamontology.org/data_1234": "Sequence set (nucleic acid)",
+ "http://edamontology.org/data_1235": "Sequence cluster",
+ "http://edamontology.org/data_1236": "Psiblast checkpoint file",
+ "http://edamontology.org/data_1237": "HMMER synthetic sequences set",
+ "http://edamontology.org/data_1238": "Proteolytic digest",
+ "http://edamontology.org/data_1239": "Restriction digest",
+ "http://edamontology.org/data_1240": "PCR primers",
+ "http://edamontology.org/data_1241": "vectorstrip cloning vector definition file",
+ "http://edamontology.org/data_1242": "Primer3 internal oligo mishybridizing library",
+ "http://edamontology.org/data_1243": "Primer3 mispriming library file",
+ "http://edamontology.org/data_1244": "primersearch primer pairs sequence record",
+ "http://edamontology.org/data_1245": "Sequence cluster (protein)",
+ "http://edamontology.org/data_1246": "Sequence cluster (nucleic acid)",
+ "http://edamontology.org/data_1249": "Sequence length",
+ "http://edamontology.org/data_1250": "Word size",
+ "http://edamontology.org/data_1251": "Window size",
+ "http://edamontology.org/data_1252": "Sequence length range",
+ "http://edamontology.org/data_1253": "Sequence information report",
+ "http://edamontology.org/data_1254": "Sequence property",
+ "http://edamontology.org/data_1255": "Sequence features",
+ "http://edamontology.org/data_1256": "Sequence features (comparative)",
+ "http://edamontology.org/data_1257": "Sequence property (protein)",
+ "http://edamontology.org/data_1258": "Sequence property (nucleic acid)",
+ "http://edamontology.org/data_1259": "Sequence complexity report",
+ "http://edamontology.org/data_1260": "Sequence ambiguity report",
+ "http://edamontology.org/data_1261": "Sequence composition report",
+ "http://edamontology.org/data_1262": "Peptide molecular weight hits",
+ "http://edamontology.org/data_1263": "Base position variability plot",
+ "http://edamontology.org/data_1264": "Sequence composition table",
+ "http://edamontology.org/data_1265": "Base frequencies table",
+ "http://edamontology.org/data_1266": "Base word frequencies table",
+ "http://edamontology.org/data_1267": "Amino acid frequencies table",
+ "http://edamontology.org/data_1268": "Amino acid word frequencies table",
+ "http://edamontology.org/data_1269": "DAS sequence feature annotation",
+ "http://edamontology.org/data_1270": "Feature table",
+ "http://edamontology.org/data_1274": "Map",
+ "http://edamontology.org/data_1276": "Nucleic acid features",
+ "http://edamontology.org/data_1277": "Protein features",
+ "http://edamontology.org/data_1278": "Genetic map",
+ "http://edamontology.org/data_1279": "Sequence map",
+ "http://edamontology.org/data_1280": "Physical map",
+ "http://edamontology.org/data_1281": "Sequence signature map",
+ "http://edamontology.org/data_1283": "Cytogenetic map",
+ "http://edamontology.org/data_1284": "DNA transduction map",
+ "http://edamontology.org/data_1285": "Gene map",
+ "http://edamontology.org/data_1286": "Plasmid map",
+ "http://edamontology.org/data_1288": "Genome map",
+ "http://edamontology.org/data_1289": "Restriction map",
+ "http://edamontology.org/data_1290": "InterPro compact match image",
+ "http://edamontology.org/data_1291": "InterPro detailed match image",
+ "http://edamontology.org/data_1292": "InterPro architecture image",
+ "http://edamontology.org/data_1293": "SMART protein schematic",
+ "http://edamontology.org/data_1294": "GlobPlot domain image",
+ "http://edamontology.org/data_1298": "Sequence motif matches",
+ "http://edamontology.org/data_1299": "Sequence features (repeats)",
+ "http://edamontology.org/data_1300": "Gene and transcript structure (report)",
+ "http://edamontology.org/data_1301": "Mobile genetic elements",
+ "http://edamontology.org/data_1303": "Nucleic acid features (quadruplexes)",
+ "http://edamontology.org/data_1306": "Nucleosome exclusion sequences",
+ "http://edamontology.org/data_1309": "Gene features (exonic splicing enhancer)",
+ "http://edamontology.org/data_1310": "Nucleic acid features (microRNA)",
+ "http://edamontology.org/data_1313": "Coding region",
+ "http://edamontology.org/data_1314": "Gene features (SECIS element)",
+ "http://edamontology.org/data_1315": "Transcription factor binding sites",
+ "http://edamontology.org/data_1321": "Protein features (sites)",
+ "http://edamontology.org/data_1322": "Protein features report (signal peptides)",
+ "http://edamontology.org/data_1323": "Protein features report (cleavage sites)",
+ "http://edamontology.org/data_1324": "Protein features (post-translation modifications)",
+ "http://edamontology.org/data_1325": "Protein features report (active sites)",
+ "http://edamontology.org/data_1326": "Protein features report (binding sites)",
+ "http://edamontology.org/data_1327": "Protein features (epitopes)",
+ "http://edamontology.org/data_1328": "Protein features report (nucleic acid binding sites)",
+ "http://edamontology.org/data_1329": "MHC Class I epitopes report",
+ "http://edamontology.org/data_1330": "MHC Class II epitopes report",
+ "http://edamontology.org/data_1331": "Protein features (PEST sites)",
+ "http://edamontology.org/data_1338": "Sequence database hits scores list",
+ "http://edamontology.org/data_1339": "Sequence database hits alignments list",
+ "http://edamontology.org/data_1340": "Sequence database hits evaluation data",
+ "http://edamontology.org/data_1344": "MEME motif alphabet",
+ "http://edamontology.org/data_1345": "MEME background frequencies file",
+ "http://edamontology.org/data_1346": "MEME motifs directive file",
+ "http://edamontology.org/data_1347": "Dirichlet distribution",
+ "http://edamontology.org/data_1348": "HMM emission and transition counts",
+ "http://edamontology.org/data_1352": "Regular expression",
+ "http://edamontology.org/data_1353": "Sequence motif",
+ "http://edamontology.org/data_1354": "Sequence profile",
+ "http://edamontology.org/data_1355": "Protein signature",
+ "http://edamontology.org/data_1358": "Prosite nucleotide pattern",
+ "http://edamontology.org/data_1359": "Prosite protein pattern",
+ "http://edamontology.org/data_1361": "Position frequency matrix",
+ "http://edamontology.org/data_1362": "Position weight matrix",
+ "http://edamontology.org/data_1363": "Information content matrix",
+ "http://edamontology.org/data_1364": "Hidden Markov model",
+ "http://edamontology.org/data_1365": "Fingerprint",
+ "http://edamontology.org/data_1368": "Domainatrix signature",
+ "http://edamontology.org/data_1371": "HMMER NULL hidden Markov model",
+ "http://edamontology.org/data_1372": "Protein family signature",
+ "http://edamontology.org/data_1373": "Protein domain signature",
+ "http://edamontology.org/data_1374": "Protein region signature",
+ "http://edamontology.org/data_1375": "Protein repeat signature",
+ "http://edamontology.org/data_1376": "Protein site signature",
+ "http://edamontology.org/data_1377": "Protein conserved site signature",
+ "http://edamontology.org/data_1378": "Protein active site signature",
+ "http://edamontology.org/data_1379": "Protein binding site signature",
+ "http://edamontology.org/data_1380": "Protein post-translational modification signature",
+ "http://edamontology.org/data_1381": "Pair sequence alignment",
+ "http://edamontology.org/data_1382": "Sequence alignment (multiple)",
+ "http://edamontology.org/data_1383": "Nucleic acid sequence alignment",
+ "http://edamontology.org/data_1384": "Protein sequence alignment",
+ "http://edamontology.org/data_1385": "Hybrid sequence alignment",
+ "http://edamontology.org/data_1386": "Sequence alignment (nucleic acid pair)",
+ "http://edamontology.org/data_1387": "Sequence alignment (protein pair)",
+ "http://edamontology.org/data_1388": "Hybrid sequence alignment (pair)",
+ "http://edamontology.org/data_1389": "Multiple nucleotide sequence alignment",
+ "http://edamontology.org/data_1390": "Multiple protein sequence alignment",
+ "http://edamontology.org/data_1394": "Alignment score or penalty",
+ "http://edamontology.org/data_1395": "Score end gaps control",
+ "http://edamontology.org/data_1396": "Aligned sequence order",
+ "http://edamontology.org/data_1397": "Gap opening penalty",
+ "http://edamontology.org/data_1398": "Gap extension penalty",
+ "http://edamontology.org/data_1399": "Gap separation penalty",
+ "http://edamontology.org/data_1400": "Terminal gap penalty",
+ "http://edamontology.org/data_1401": "Match reward score",
+ "http://edamontology.org/data_1402": "Mismatch penalty score",
+ "http://edamontology.org/data_1403": "Drop off score",
+ "http://edamontology.org/data_1404": "Gap opening penalty (integer)",
+ "http://edamontology.org/data_1405": "Gap opening penalty (float)",
+ "http://edamontology.org/data_1406": "Gap extension penalty (integer)",
+ "http://edamontology.org/data_1407": "Gap extension penalty (float)",
+ "http://edamontology.org/data_1408": "Gap separation penalty (integer)",
+ "http://edamontology.org/data_1409": "Gap separation penalty (float)",
+ "http://edamontology.org/data_1410": "Terminal gap opening penalty",
+ "http://edamontology.org/data_1411": "Terminal gap extension penalty",
+ "http://edamontology.org/data_1412": "Sequence identity",
+ "http://edamontology.org/data_1413": "Sequence similarity",
+ "http://edamontology.org/data_1414": "Sequence alignment metadata (quality report)",
+ "http://edamontology.org/data_1415": "Sequence alignment report (site conservation)",
+ "http://edamontology.org/data_1416": "Sequence alignment report (site correlation)",
+ "http://edamontology.org/data_1417": "Sequence-profile alignment (Domainatrix signature)",
+ "http://edamontology.org/data_1418": "Sequence-profile alignment (HMM)",
+ "http://edamontology.org/data_1420": "Sequence-profile alignment (fingerprint)",
+ "http://edamontology.org/data_1426": "Phylogenetic continuous quantitative data",
+ "http://edamontology.org/data_1427": "Phylogenetic discrete data",
+ "http://edamontology.org/data_1428": "Phylogenetic character cliques",
+ "http://edamontology.org/data_1429": "Phylogenetic invariants",
+ "http://edamontology.org/data_1438": "Phylogenetic report",
+ "http://edamontology.org/data_1439": "DNA substitution model",
+ "http://edamontology.org/data_1440": "Phylogenetic tree report (tree shape)",
+ "http://edamontology.org/data_1441": "Phylogenetic tree report (tree evaluation)",
+ "http://edamontology.org/data_1442": "Phylogenetic tree distances",
+ "http://edamontology.org/data_1443": "Phylogenetic tree report (tree stratigraphic)",
+ "http://edamontology.org/data_1444": "Phylogenetic character contrasts",
+ "http://edamontology.org/data_1446": "Comparison matrix (integers)",
+ "http://edamontology.org/data_1447": "Comparison matrix (floats)",
+ "http://edamontology.org/data_1448": "Comparison matrix (nucleotide)",
+ "http://edamontology.org/data_1449": "Comparison matrix (amino acid)",
+ "http://edamontology.org/data_1450": "Nucleotide comparison matrix (integers)",
+ "http://edamontology.org/data_1451": "Nucleotide comparison matrix (floats)",
+ "http://edamontology.org/data_1452": "Amino acid comparison matrix (integers)",
+ "http://edamontology.org/data_1453": "Amino acid comparison matrix (floats)",
+ "http://edamontology.org/data_1459": "Nucleic acid structure",
+ "http://edamontology.org/data_1460": "Protein structure",
+ "http://edamontology.org/data_1461": "Protein-ligand complex",
+ "http://edamontology.org/data_1462": "Carbohydrate structure",
+ "http://edamontology.org/data_1463": "Small molecule structure",
+ "http://edamontology.org/data_1464": "DNA structure",
+ "http://edamontology.org/data_1465": "RNA structure",
+ "http://edamontology.org/data_1466": "tRNA structure",
+ "http://edamontology.org/data_1467": "Protein chain",
+ "http://edamontology.org/data_1468": "Protein domain",
+ "http://edamontology.org/data_1469": "Protein structure (all atoms)",
+ "http://edamontology.org/data_1470": "C-alpha trace",
+ "http://edamontology.org/data_1471": "Protein chain (all atoms)",
+ "http://edamontology.org/data_1472": "Protein chain (C-alpha atoms)",
+ "http://edamontology.org/data_1473": "Protein domain (all atoms)",
+ "http://edamontology.org/data_1474": "Protein domain (C-alpha atoms)",
+ "http://edamontology.org/data_1479": "Structure alignment (pair)",
+ "http://edamontology.org/data_1480": "Structure alignment (multiple)",
+ "http://edamontology.org/data_1481": "Protein structure alignment",
+ "http://edamontology.org/data_1482": "Nucleic acid structure alignment",
+ "http://edamontology.org/data_1483": "Structure alignment (protein pair)",
+ "http://edamontology.org/data_1484": "Multiple protein tertiary structure alignment",
+ "http://edamontology.org/data_1485": "Structure alignment (protein all atoms)",
+ "http://edamontology.org/data_1486": "Structure alignment (protein C-alpha atoms)",
+ "http://edamontology.org/data_1487": "Pairwise protein tertiary structure alignment (all atoms)",
+ "http://edamontology.org/data_1488": "Pairwise protein tertiary structure alignment (C-alpha atoms)",
+ "http://edamontology.org/data_1489": "Multiple protein tertiary structure alignment (all atoms)",
+ "http://edamontology.org/data_1490": "Multiple protein tertiary structure alignment (C-alpha atoms)",
+ "http://edamontology.org/data_1491": "Structure alignment (nucleic acid pair)",
+ "http://edamontology.org/data_1492": "Multiple nucleic acid tertiary structure alignment",
+ "http://edamontology.org/data_1493": "RNA structure alignment",
+ "http://edamontology.org/data_1494": "Structural transformation matrix",
+ "http://edamontology.org/data_1495": "DaliLite hit table",
+ "http://edamontology.org/data_1496": "Molecular similarity score",
+ "http://edamontology.org/data_1497": "Root-mean-square deviation",
+ "http://edamontology.org/data_1498": "Tanimoto similarity score",
+ "http://edamontology.org/data_1499": "3D-1D scoring matrix",
+ "http://edamontology.org/data_1501": "Amino acid index",
+ "http://edamontology.org/data_1502": "Amino acid index (chemical classes)",
+ "http://edamontology.org/data_1503": "Amino acid pair-wise contact potentials",
+ "http://edamontology.org/data_1505": "Amino acid index (molecular weight)",
+ "http://edamontology.org/data_1506": "Amino acid index (hydropathy)",
+ "http://edamontology.org/data_1507": "Amino acid index (White-Wimley data)",
+ "http://edamontology.org/data_1508": "Amino acid index (van der Waals radii)",
+ "http://edamontology.org/data_1509": "Enzyme report",
+ "http://edamontology.org/data_1517": "Restriction enzyme report",
+ "http://edamontology.org/data_1519": "Peptide molecular weights",
+ "http://edamontology.org/data_1520": "Peptide hydrophobic moment",
+ "http://edamontology.org/data_1521": "Protein aliphatic index",
+ "http://edamontology.org/data_1522": "Protein sequence hydropathy plot",
+ "http://edamontology.org/data_1523": "Protein charge plot",
+ "http://edamontology.org/data_1524": "Protein solubility",
+ "http://edamontology.org/data_1525": "Protein crystallizability",
+ "http://edamontology.org/data_1526": "Protein globularity",
+ "http://edamontology.org/data_1527": "Protein titration curve",
+ "http://edamontology.org/data_1528": "Protein isoelectric point",
+ "http://edamontology.org/data_1529": "Protein pKa value",
+ "http://edamontology.org/data_1530": "Protein hydrogen exchange rate",
+ "http://edamontology.org/data_1531": "Protein extinction coefficient",
+ "http://edamontology.org/data_1532": "Protein optical density",
+ "http://edamontology.org/data_1533": "Protein subcellular localisation",
+ "http://edamontology.org/data_1534": "Peptide immunogenicity data",
+ "http://edamontology.org/data_1536": "MHC peptide immunogenicity report",
+ "http://edamontology.org/data_1537": "Protein structure report",
+ "http://edamontology.org/data_1539": "Protein structural quality report",
+ "http://edamontology.org/data_1540": "Protein non-covalent interactions report",
+ "http://edamontology.org/data_1541": "Protein flexibility or motion report",
+ "http://edamontology.org/data_1542": "Protein solvent accessibility",
+ "http://edamontology.org/data_1543": "Protein surface report",
+ "http://edamontology.org/data_1544": "Ramachandran plot",
+ "http://edamontology.org/data_1545": "Protein dipole moment",
+ "http://edamontology.org/data_1546": "Protein distance matrix",
+ "http://edamontology.org/data_1547": "Protein contact map",
+ "http://edamontology.org/data_1548": "Protein residue 3D cluster",
+ "http://edamontology.org/data_1549": "Protein hydrogen bonds",
+ "http://edamontology.org/data_1550": "Protein non-canonical interactions",
+ "http://edamontology.org/data_1553": "CATH node",
+ "http://edamontology.org/data_1554": "SCOP node",
+ "http://edamontology.org/data_1555": "EMBASSY domain classification",
+ "http://edamontology.org/data_1556": "CATH class",
+ "http://edamontology.org/data_1557": "CATH architecture",
+ "http://edamontology.org/data_1558": "CATH topology",
+ "http://edamontology.org/data_1559": "CATH homologous superfamily",
+ "http://edamontology.org/data_1560": "CATH structurally similar group",
+ "http://edamontology.org/data_1561": "CATH functional category",
+ "http://edamontology.org/data_1564": "Protein fold recognition report",
+ "http://edamontology.org/data_1565": "Protein-protein interaction report",
+ "http://edamontology.org/data_1566": "Protein-ligand interaction report",
+ "http://edamontology.org/data_1567": "Protein-nucleic acid interactions report",
+ "http://edamontology.org/data_1583": "Nucleic acid melting profile",
+ "http://edamontology.org/data_1584": "Nucleic acid enthalpy",
+ "http://edamontology.org/data_1585": "Nucleic acid entropy",
+ "http://edamontology.org/data_1586": "Nucleic acid melting temperature",
+ "http://edamontology.org/data_1587": "Nucleic acid stitch profile",
+ "http://edamontology.org/data_1588": "DNA base pair stacking energies data",
+ "http://edamontology.org/data_1589": "DNA base pair twist angle data",
+ "http://edamontology.org/data_1590": "DNA base trimer roll angles data",
+ "http://edamontology.org/data_1591": "Vienna RNA parameters",
+ "http://edamontology.org/data_1592": "Vienna RNA structure constraints",
+ "http://edamontology.org/data_1593": "Vienna RNA concentration data",
+ "http://edamontology.org/data_1594": "Vienna RNA calculated energy",
+ "http://edamontology.org/data_1595": "Base pairing probability matrix dotplot",
+ "http://edamontology.org/data_1596": "Nucleic acid folding report",
+ "http://edamontology.org/data_1597": "Codon usage table",
+ "http://edamontology.org/data_1598": "Genetic code",
+ "http://edamontology.org/data_1599": "Codon adaptation index",
+ "http://edamontology.org/data_1600": "Codon usage bias plot",
+ "http://edamontology.org/data_1601": "Nc statistic",
+ "http://edamontology.org/data_1602": "Codon usage fraction difference",
+ "http://edamontology.org/data_1621": "Pharmacogenomic test report",
+ "http://edamontology.org/data_1622": "Disease report",
+ "http://edamontology.org/data_1634": "Linkage disequilibrium (report)",
+ "http://edamontology.org/data_1636": "Heat map",
+ "http://edamontology.org/data_1642": "Affymetrix probe sets library file",
+ "http://edamontology.org/data_1643": "Affymetrix probe sets information library file",
+ "http://edamontology.org/data_1646": "Molecular weights standard fingerprint",
+ "http://edamontology.org/data_1656": "Metabolic pathway report",
+ "http://edamontology.org/data_1657": "Genetic information processing pathway report",
+ "http://edamontology.org/data_1658": "Environmental information processing pathway report",
+ "http://edamontology.org/data_1659": "Signal transduction pathway report",
+ "http://edamontology.org/data_1660": "Cellular process pathways report",
+ "http://edamontology.org/data_1661": "Disease pathway or network report",
+ "http://edamontology.org/data_1662": "Drug structure relationship map",
+ "http://edamontology.org/data_1663": "Protein interaction networks",
+ "http://edamontology.org/data_1664": "MIRIAM datatype",
+ "http://edamontology.org/data_1667": "E-value",
+ "http://edamontology.org/data_1668": "Z-value",
+ "http://edamontology.org/data_1669": "P-value",
+ "http://edamontology.org/data_1670": "Database version information",
+ "http://edamontology.org/data_1671": "Tool version information",
+ "http://edamontology.org/data_1672": "CATH version information",
+ "http://edamontology.org/data_1673": "Swiss-Prot to PDB mapping",
+ "http://edamontology.org/data_1674": "Sequence database cross-references",
+ "http://edamontology.org/data_1675": "Job status",
+ "http://edamontology.org/data_1676": "Job ID",
+ "http://edamontology.org/data_1677": "Job type",
+ "http://edamontology.org/data_1678": "Tool log",
+ "http://edamontology.org/data_1679": "DaliLite log file",
+ "http://edamontology.org/data_1680": "STRIDE log file",
+ "http://edamontology.org/data_1681": "NACCESS log file",
+ "http://edamontology.org/data_1682": "EMBOSS wordfinder log file",
+ "http://edamontology.org/data_1683": "EMBOSS domainatrix log file",
+ "http://edamontology.org/data_1684": "EMBOSS sites log file",
+ "http://edamontology.org/data_1685": "EMBOSS supermatcher error file",
+ "http://edamontology.org/data_1686": "EMBOSS megamerger log file",
+ "http://edamontology.org/data_1687": "EMBOSS whichdb log file",
+ "http://edamontology.org/data_1688": "EMBOSS vectorstrip log file",
+ "http://edamontology.org/data_1689": "Username",
+ "http://edamontology.org/data_1690": "Password",
+ "http://edamontology.org/data_1691": "Email address",
+ "http://edamontology.org/data_1692": "Person name",
+ "http://edamontology.org/data_1693": "Number of iterations",
+ "http://edamontology.org/data_1694": "Number of output entities",
+ "http://edamontology.org/data_1695": "Hit sort order",
+ "http://edamontology.org/data_1696": "Drug report",
+ "http://edamontology.org/data_1707": "Phylogenetic tree image",
+ "http://edamontology.org/data_1708": "RNA secondary structure image",
+ "http://edamontology.org/data_1709": "Protein secondary structure image",
+ "http://edamontology.org/data_1710": "Structure image",
+ "http://edamontology.org/data_1711": "Sequence alignment image",
+ "http://edamontology.org/data_1712": "Chemical structure image",
+ "http://edamontology.org/data_1713": "Fate map",
+ "http://edamontology.org/data_1714": "Microarray spots image",
+ "http://edamontology.org/data_1715": "BioPax term",
+ "http://edamontology.org/data_1716": "GO",
+ "http://edamontology.org/data_1717": "MeSH",
+ "http://edamontology.org/data_1718": "HGNC",
+ "http://edamontology.org/data_1719": "NCBI taxonomy vocabulary",
+ "http://edamontology.org/data_1720": "Plant ontology term",
+ "http://edamontology.org/data_1721": "UMLS",
+ "http://edamontology.org/data_1722": "FMA",
+ "http://edamontology.org/data_1723": "EMAP",
+ "http://edamontology.org/data_1724": "ChEBI",
+ "http://edamontology.org/data_1725": "MGED",
+ "http://edamontology.org/data_1726": "myGrid",
+ "http://edamontology.org/data_1727": "GO (biological process)",
+ "http://edamontology.org/data_1728": "GO (molecular function)",
+ "http://edamontology.org/data_1729": "GO (cellular component)",
+ "http://edamontology.org/data_1730": "Ontology relation type",
+ "http://edamontology.org/data_1731": "Ontology concept definition",
+ "http://edamontology.org/data_1732": "Ontology concept comment",
+ "http://edamontology.org/data_1733": "Ontology concept reference",
+ "http://edamontology.org/data_1738": "doc2loc document information",
+ "http://edamontology.org/data_1742": "PDB residue number",
+ "http://edamontology.org/data_1743": "Atomic coordinate",
+ "http://edamontology.org/data_1744": "Atomic x coordinate",
+ "http://edamontology.org/data_1745": "Atomic y coordinate",
+ "http://edamontology.org/data_1746": "Atomic z coordinate",
+ "http://edamontology.org/data_1748": "PDB atom name",
+ "http://edamontology.org/data_1755": "Protein atom",
+ "http://edamontology.org/data_1756": "Protein residue",
+ "http://edamontology.org/data_1757": "Atom name",
+ "http://edamontology.org/data_1758": "PDB residue name",
+ "http://edamontology.org/data_1759": "PDB model number",
+ "http://edamontology.org/data_1762": "CATH domain report",
+ "http://edamontology.org/data_1764": "CATH representative domain sequences (ATOM)",
+ "http://edamontology.org/data_1765": "CATH representative domain sequences (COMBS)",
+ "http://edamontology.org/data_1766": "CATH domain sequences (ATOM)",
+ "http://edamontology.org/data_1767": "CATH domain sequences (COMBS)",
+ "http://edamontology.org/data_1771": "Sequence version",
+ "http://edamontology.org/data_1772": "Score",
+ "http://edamontology.org/data_1776": "Protein report (function)",
+ "http://edamontology.org/data_1783": "Gene name (ASPGD)",
+ "http://edamontology.org/data_1784": "Gene name (CGD)",
+ "http://edamontology.org/data_1785": "Gene name (dictyBase)",
+ "http://edamontology.org/data_1786": "Gene name (EcoGene primary)",
+ "http://edamontology.org/data_1787": "Gene name (MaizeGDB)",
+ "http://edamontology.org/data_1788": "Gene name (SGD)",
+ "http://edamontology.org/data_1789": "Gene name (TGD)",
+ "http://edamontology.org/data_1790": "Gene name (CGSC)",
+ "http://edamontology.org/data_1791": "Gene name (HGNC)",
+ "http://edamontology.org/data_1792": "Gene name (MGD)",
+ "http://edamontology.org/data_1793": "Gene name (Bacillus subtilis)",
+ "http://edamontology.org/data_1794": "Gene ID (PlasmoDB)",
+ "http://edamontology.org/data_1795": "Gene ID (EcoGene)",
+ "http://edamontology.org/data_1796": "Gene ID (FlyBase)",
+ "http://edamontology.org/data_1797": "Gene ID (GeneDB Glossina morsitans)",
+ "http://edamontology.org/data_1798": "Gene ID (GeneDB Leishmania major)",
+ "http://edamontology.org/data_1799": "Gene ID (GeneDB Plasmodium falciparum)",
+ "http://edamontology.org/data_1800": "Gene ID (GeneDB Schizosaccharomyces pombe)",
+ "http://edamontology.org/data_1801": "Gene ID (GeneDB Trypanosoma brucei)",
+ "http://edamontology.org/data_1802": "Gene ID (Gramene)",
+ "http://edamontology.org/data_1803": "Gene ID (Virginia microbial)",
+ "http://edamontology.org/data_1804": "Gene ID (SGN)",
+ "http://edamontology.org/data_1805": "Gene ID (WormBase)",
+ "http://edamontology.org/data_1806": "Gene synonym",
+ "http://edamontology.org/data_1807": "ORF name",
+ "http://edamontology.org/data_1852": "Sequence assembly component",
+ "http://edamontology.org/data_1853": "Chromosome annotation (aberration)",
+ "http://edamontology.org/data_1855": "Clone ID",
+ "http://edamontology.org/data_1856": "PDB insertion code",
+ "http://edamontology.org/data_1857": "Atomic occupancy",
+ "http://edamontology.org/data_1858": "Isotropic B factor",
+ "http://edamontology.org/data_1859": "Deletion map",
+ "http://edamontology.org/data_1860": "QTL map",
+ "http://edamontology.org/data_1863": "Haplotype map",
+ "http://edamontology.org/data_1864": "Map set data",
+ "http://edamontology.org/data_1865": "Map feature",
+ "http://edamontology.org/data_1866": "Map type",
+ "http://edamontology.org/data_1867": "Protein fold name",
+ "http://edamontology.org/data_1868": "Taxon",
+ "http://edamontology.org/data_1869": "Organism identifier",
+ "http://edamontology.org/data_1870": "Genus name",
+ "http://edamontology.org/data_1872": "Taxonomic classification",
+ "http://edamontology.org/data_1873": "iHOP organism ID",
+ "http://edamontology.org/data_1874": "Genbank common name",
+ "http://edamontology.org/data_1875": "NCBI taxon",
+ "http://edamontology.org/data_1877": "Synonym",
+ "http://edamontology.org/data_1878": "Misspelling",
+ "http://edamontology.org/data_1879": "Acronym",
+ "http://edamontology.org/data_1880": "Misnomer",
+ "http://edamontology.org/data_1881": "Author ID",
+ "http://edamontology.org/data_1882": "DragonDB author identifier",
+ "http://edamontology.org/data_1883": "Annotated URI",
+ "http://edamontology.org/data_1884": "UniProt keywords",
+ "http://edamontology.org/data_1885": "Gene ID (GeneFarm)",
+ "http://edamontology.org/data_1886": "Blattner number",
+ "http://edamontology.org/data_1887": "Gene ID (MIPS Maize)",
+ "http://edamontology.org/data_1888": "Gene ID (MIPS Medicago)",
+ "http://edamontology.org/data_1889": "Gene name (DragonDB)",
+ "http://edamontology.org/data_1890": "Gene name (Arabidopsis)",
+ "http://edamontology.org/data_1891": "iHOP symbol",
+ "http://edamontology.org/data_1892": "Gene name (GeneFarm)",
+ "http://edamontology.org/data_1893": "Locus ID",
+ "http://edamontology.org/data_1895": "Locus ID (AGI)",
+ "http://edamontology.org/data_1896": "Locus ID (ASPGD)",
+ "http://edamontology.org/data_1897": "Locus ID (MGG)",
+ "http://edamontology.org/data_1898": "Locus ID (CGD)",
+ "http://edamontology.org/data_1899": "Locus ID (CMR)",
+ "http://edamontology.org/data_1900": "NCBI locus tag",
+ "http://edamontology.org/data_1901": "Locus ID (SGD)",
+ "http://edamontology.org/data_1902": "Locus ID (MMP)",
+ "http://edamontology.org/data_1903": "Locus ID (DictyBase)",
+ "http://edamontology.org/data_1904": "Locus ID (EntrezGene)",
+ "http://edamontology.org/data_1905": "Locus ID (MaizeGDB)",
+ "http://edamontology.org/data_1906": "Quantitative trait locus",
+ "http://edamontology.org/data_1907": "Gene ID (KOME)",
+ "http://edamontology.org/data_1908": "Locus ID (Tropgene)",
+ "http://edamontology.org/data_1916": "Alignment",
+ "http://edamontology.org/data_1917": "Atomic property",
+ "http://edamontology.org/data_2007": "UniProt keyword",
+ "http://edamontology.org/data_2009": "Ordered locus name",
+ "http://edamontology.org/data_2012": "Sequence coordinates",
+ "http://edamontology.org/data_2016": "Amino acid property",
+ "http://edamontology.org/data_2018": "Annotation",
+ "http://edamontology.org/data_2019": "Map data",
+ "http://edamontology.org/data_2022": "Vienna RNA structural data",
+ "http://edamontology.org/data_2023": "Sequence mask parameter",
+ "http://edamontology.org/data_2024": "Enzyme kinetics data",
+ "http://edamontology.org/data_2025": "Michaelis Menten plot",
+ "http://edamontology.org/data_2026": "Hanes Woolf plot",
+ "http://edamontology.org/data_2028": "Experimental data",
+ "http://edamontology.org/data_2041": "Genome version information",
+ "http://edamontology.org/data_2042": "Evidence",
+ "http://edamontology.org/data_2043": "Sequence record lite",
+ "http://edamontology.org/data_2044": "Sequence",
+ "http://edamontology.org/data_2046": "Nucleic acid sequence record (lite)",
+ "http://edamontology.org/data_2047": "Protein sequence record (lite)",
+ "http://edamontology.org/data_2048": "Report",
+ "http://edamontology.org/data_2050": "Molecular property (general)",
+ "http://edamontology.org/data_2053": "Structural data",
+ "http://edamontology.org/data_2070": "Sequence motif (nucleic acid)",
+ "http://edamontology.org/data_2071": "Sequence motif (protein)",
+ "http://edamontology.org/data_2079": "Search parameter",
+ "http://edamontology.org/data_2080": "Database search results",
+ "http://edamontology.org/data_2081": "Secondary structure",
+ "http://edamontology.org/data_2082": "Matrix",
+ "http://edamontology.org/data_2083": "Alignment data",
+ "http://edamontology.org/data_2084": "Nucleic acid report",
+ "http://edamontology.org/data_2085": "Structure report",
+ "http://edamontology.org/data_2086": "Nucleic acid structure data",
+ "http://edamontology.org/data_2087": "Molecular property",
+ "http://edamontology.org/data_2088": "DNA base structural data",
+ "http://edamontology.org/data_2090": "Database entry version information",
+ "http://edamontology.org/data_2091": "Accession",
+ "http://edamontology.org/data_2092": "SNP",
+ "http://edamontology.org/data_2093": "Data reference",
+ "http://edamontology.org/data_2098": "Job identifier",
+ "http://edamontology.org/data_2099": "Name",
+ "http://edamontology.org/data_2100": "Type",
+ "http://edamontology.org/data_2101": "User ID",
+ "http://edamontology.org/data_2102": "KEGG organism code",
+ "http://edamontology.org/data_2103": "Gene name (KEGG GENES)",
+ "http://edamontology.org/data_2104": "BioCyc ID",
+ "http://edamontology.org/data_2105": "Compound ID (BioCyc)",
+ "http://edamontology.org/data_2106": "Reaction ID (BioCyc)",
+ "http://edamontology.org/data_2107": "Enzyme ID (BioCyc)",
+ "http://edamontology.org/data_2108": "Reaction ID",
+ "http://edamontology.org/data_2109": "Identifier (hybrid)",
+ "http://edamontology.org/data_2110": "Molecular property identifier",
+ "http://edamontology.org/data_2111": "Codon usage table ID",
+ "http://edamontology.org/data_2112": "FlyBase primary identifier",
+ "http://edamontology.org/data_2113": "WormBase identifier",
+ "http://edamontology.org/data_2114": "WormBase wormpep ID",
+ "http://edamontology.org/data_2116": "Nucleic acid features (codon)",
+ "http://edamontology.org/data_2117": "Map identifier",
+ "http://edamontology.org/data_2118": "Person identifier",
+ "http://edamontology.org/data_2119": "Nucleic acid identifier",
+ "http://edamontology.org/data_2126": "Translation frame specification",
+ "http://edamontology.org/data_2127": "Genetic code identifier",
+ "http://edamontology.org/data_2128": "Genetic code name",
+ "http://edamontology.org/data_2129": "File format name",
+ "http://edamontology.org/data_2130": "Sequence profile type",
+ "http://edamontology.org/data_2131": "Operating system name",
+ "http://edamontology.org/data_2132": "Mutation type",
+ "http://edamontology.org/data_2133": "Logical operator",
+ "http://edamontology.org/data_2134": "Results sort order",
+ "http://edamontology.org/data_2135": "Toggle",
+ "http://edamontology.org/data_2136": "Sequence width",
+ "http://edamontology.org/data_2137": "Gap penalty",
+ "http://edamontology.org/data_2139": "Nucleic acid melting temperature",
+ "http://edamontology.org/data_2140": "Concentration",
+ "http://edamontology.org/data_2141": "Window step size",
+ "http://edamontology.org/data_2142": "EMBOSS graph",
+ "http://edamontology.org/data_2143": "EMBOSS report",
+ "http://edamontology.org/data_2145": "Sequence offset",
+ "http://edamontology.org/data_2146": "Threshold",
+ "http://edamontology.org/data_2147": "Protein report (transcription factor)",
+ "http://edamontology.org/data_2149": "Database category name",
+ "http://edamontology.org/data_2150": "Sequence profile name",
+ "http://edamontology.org/data_2151": "Color",
+ "http://edamontology.org/data_2152": "Rendering parameter",
+ "http://edamontology.org/data_2154": "Sequence name",
+ "http://edamontology.org/data_2156": "Date",
+ "http://edamontology.org/data_2157": "Word composition",
+ "http://edamontology.org/data_2160": "Fickett testcode plot",
+ "http://edamontology.org/data_2161": "Sequence similarity plot",
+ "http://edamontology.org/data_2162": "Helical wheel",
+ "http://edamontology.org/data_2163": "Helical net",
+ "http://edamontology.org/data_2164": "Protein sequence properties plot",
+ "http://edamontology.org/data_2165": "Protein ionisation curve",
+ "http://edamontology.org/data_2166": "Sequence composition plot",
+ "http://edamontology.org/data_2167": "Nucleic acid density plot",
+ "http://edamontology.org/data_2168": "Sequence trace image",
+ "http://edamontology.org/data_2169": "Nucleic acid features (siRNA)",
+ "http://edamontology.org/data_2173": "Sequence set (stream)",
+ "http://edamontology.org/data_2174": "FlyBase secondary identifier",
+ "http://edamontology.org/data_2176": "Cardinality",
+ "http://edamontology.org/data_2177": "Exactly 1",
+ "http://edamontology.org/data_2178": "1 or more",
+ "http://edamontology.org/data_2179": "Exactly 2",
+ "http://edamontology.org/data_2180": "2 or more",
+ "http://edamontology.org/data_2190": "Sequence checksum",
+ "http://edamontology.org/data_2191": "Protein features report (chemical modifications)",
+ "http://edamontology.org/data_2192": "Error",
+ "http://edamontology.org/data_2193": "Database entry metadata",
+ "http://edamontology.org/data_2198": "Gene cluster",
+ "http://edamontology.org/data_2201": "Sequence record full",
+ "http://edamontology.org/data_2208": "Plasmid identifier",
+ "http://edamontology.org/data_2209": "Mutation ID",
+ "http://edamontology.org/data_2212": "Mutation annotation (basic)",
+ "http://edamontology.org/data_2213": "Mutation annotation (prevalence)",
+ "http://edamontology.org/data_2214": "Mutation annotation (prognostic)",
+ "http://edamontology.org/data_2215": "Mutation annotation (functional)",
+ "http://edamontology.org/data_2216": "Codon number",
+ "http://edamontology.org/data_2217": "Tumor annotation",
+ "http://edamontology.org/data_2218": "Server metadata",
+ "http://edamontology.org/data_2219": "Database field name",
+ "http://edamontology.org/data_2220": "Sequence cluster ID (SYSTERS)",
+ "http://edamontology.org/data_2223": "Ontology metadata",
+ "http://edamontology.org/data_2235": "Raw SCOP domain classification",
+ "http://edamontology.org/data_2236": "Raw CATH domain classification",
+ "http://edamontology.org/data_2240": "Heterogen annotation",
+ "http://edamontology.org/data_2242": "Phylogenetic property values",
+ "http://edamontology.org/data_2245": "Sequence set (bootstrapped)",
+ "http://edamontology.org/data_2247": "Phylogenetic consensus tree",
+ "http://edamontology.org/data_2248": "Schema",
+ "http://edamontology.org/data_2249": "DTD",
+ "http://edamontology.org/data_2250": "XML Schema",
+ "http://edamontology.org/data_2251": "Relax-NG schema",
+ "http://edamontology.org/data_2252": "XSLT stylesheet",
+ "http://edamontology.org/data_2253": "Data resource definition name",
+ "http://edamontology.org/data_2254": "OBO file format name",
+ "http://edamontology.org/data_2285": "Gene ID (MIPS)",
+ "http://edamontology.org/data_2288": "Sequence identifier (protein)",
+ "http://edamontology.org/data_2289": "Sequence identifier (nucleic acid)",
+ "http://edamontology.org/data_2290": "EMBL accession",
+ "http://edamontology.org/data_2291": "UniProt ID",
+ "http://edamontology.org/data_2292": "GenBank accession",
+ "http://edamontology.org/data_2293": "Gramene secondary identifier",
+ "http://edamontology.org/data_2294": "Sequence variation ID",
+ "http://edamontology.org/data_2295": "Gene ID",
+ "http://edamontology.org/data_2296": "Gene name (AceView)",
+ "http://edamontology.org/data_2297": "Gene ID (ECK)",
+ "http://edamontology.org/data_2298": "Gene ID (HGNC)",
+ "http://edamontology.org/data_2299": "Gene name",
+ "http://edamontology.org/data_2300": "Gene name (NCBI)",
+ "http://edamontology.org/data_2301": "SMILES string",
+ "http://edamontology.org/data_2302": "STRING ID",
+ "http://edamontology.org/data_2307": "Virus annotation",
+ "http://edamontology.org/data_2308": "Virus annotation (taxonomy)",
+ "http://edamontology.org/data_2309": "Reaction ID (SABIO-RK)",
+ "http://edamontology.org/data_2313": "Carbohydrate report",
+ "http://edamontology.org/data_2314": "GI number",
+ "http://edamontology.org/data_2315": "NCBI version",
+ "http://edamontology.org/data_2316": "Cell line name",
+ "http://edamontology.org/data_2317": "Cell line name (exact)",
+ "http://edamontology.org/data_2318": "Cell line name (truncated)",
+ "http://edamontology.org/data_2319": "Cell line name (no punctuation)",
+ "http://edamontology.org/data_2320": "Cell line name (assonant)",
+ "http://edamontology.org/data_2321": "Enzyme ID",
+ "http://edamontology.org/data_2325": "REBASE enzyme number",
+ "http://edamontology.org/data_2326": "DrugBank ID",
+ "http://edamontology.org/data_2327": "GI number (protein)",
+ "http://edamontology.org/data_2335": "Bit score",
+ "http://edamontology.org/data_2336": "Translation phase specification",
+ "http://edamontology.org/data_2337": "Resource metadata",
+ "http://edamontology.org/data_2338": "Ontology identifier",
+ "http://edamontology.org/data_2339": "Ontology concept name",
+ "http://edamontology.org/data_2340": "Genome build identifier",
+ "http://edamontology.org/data_2342": "Pathway or network name",
+ "http://edamontology.org/data_2343": "Pathway ID (KEGG)",
+ "http://edamontology.org/data_2344": "Pathway ID (NCI-Nature)",
+ "http://edamontology.org/data_2345": "Pathway ID (ConsensusPathDB)",
+ "http://edamontology.org/data_2346": "Sequence cluster ID (UniRef)",
+ "http://edamontology.org/data_2347": "Sequence cluster ID (UniRef100)",
+ "http://edamontology.org/data_2348": "Sequence cluster ID (UniRef90)",
+ "http://edamontology.org/data_2349": "Sequence cluster ID (UniRef50)",
+ "http://edamontology.org/data_2353": "Ontology data",
+ "http://edamontology.org/data_2354": "RNA family report",
+ "http://edamontology.org/data_2355": "RNA family identifier",
+ "http://edamontology.org/data_2356": "RFAM accession",
+ "http://edamontology.org/data_2357": "Protein signature type",
+ "http://edamontology.org/data_2358": "Domain-nucleic acid interaction report",
+ "http://edamontology.org/data_2359": "Domain-domain interactions",
+ "http://edamontology.org/data_2360": "Domain-domain interaction (indirect)",
+ "http://edamontology.org/data_2362": "Sequence accession (hybrid)",
+ "http://edamontology.org/data_2363": "2D PAGE data",
+ "http://edamontology.org/data_2364": "2D PAGE report",
+ "http://edamontology.org/data_2365": "Pathway or network accession",
+ "http://edamontology.org/data_2366": "Secondary structure alignment",
+ "http://edamontology.org/data_2367": "ASTD ID",
+ "http://edamontology.org/data_2368": "ASTD ID (exon)",
+ "http://edamontology.org/data_2369": "ASTD ID (intron)",
+ "http://edamontology.org/data_2370": "ASTD ID (polya)",
+ "http://edamontology.org/data_2371": "ASTD ID (tss)",
+ "http://edamontology.org/data_2372": "2D PAGE spot report",
+ "http://edamontology.org/data_2373": "Spot ID",
+ "http://edamontology.org/data_2374": "Spot serial number",
+ "http://edamontology.org/data_2375": "Spot ID (HSC-2DPAGE)",
+ "http://edamontology.org/data_2378": "Protein-motif interaction",
+ "http://edamontology.org/data_2379": "Strain identifier",
+ "http://edamontology.org/data_2380": "CABRI accession",
+ "http://edamontology.org/data_2381": "Experiment report (genotyping)",
+ "http://edamontology.org/data_2382": "Genotype experiment ID",
+ "http://edamontology.org/data_2383": "EGA accession",
+ "http://edamontology.org/data_2384": "IPI protein ID",
+ "http://edamontology.org/data_2385": "RefSeq accession (protein)",
+ "http://edamontology.org/data_2386": "EPD ID",
+ "http://edamontology.org/data_2387": "TAIR accession",
+ "http://edamontology.org/data_2388": "TAIR accession (At gene)",
+ "http://edamontology.org/data_2389": "UniSTS accession",
+ "http://edamontology.org/data_2390": "UNITE accession",
+ "http://edamontology.org/data_2391": "UTR accession",
+ "http://edamontology.org/data_2392": "UniParc accession",
+ "http://edamontology.org/data_2393": "mFLJ/mKIAA number",
+ "http://edamontology.org/data_2395": "Fungi annotation",
+ "http://edamontology.org/data_2396": "Fungi annotation (anamorph)",
+ "http://edamontology.org/data_2398": "Ensembl protein ID",
+ "http://edamontology.org/data_2400": "Toxin annotation",
+ "http://edamontology.org/data_2401": "Protein report (membrane protein)",
+ "http://edamontology.org/data_2402": "Protein-drug interaction report",
+ "http://edamontology.org/data_2522": "Map data",
+ "http://edamontology.org/data_2523": "Phylogenetic data",
+ "http://edamontology.org/data_2524": "Protein data",
+ "http://edamontology.org/data_2525": "Nucleic acid data",
+ "http://edamontology.org/data_2526": "Text data",
+ "http://edamontology.org/data_2527": "Parameter",
+ "http://edamontology.org/data_2528": "Molecular data",
+ "http://edamontology.org/data_2529": "Molecule report",
+ "http://edamontology.org/data_2530": "Organism report",
+ "http://edamontology.org/data_2531": "Protocol",
+ "http://edamontology.org/data_2534": "Sequence attribute",
+ "http://edamontology.org/data_2535": "Sequence tag profile",
+ "http://edamontology.org/data_2536": "Mass spectrometry data",
+ "http://edamontology.org/data_2537": "Protein structure raw data",
+ "http://edamontology.org/data_2538": "Mutation identifier",
+ "http://edamontology.org/data_2539": "Alignment data",
+ "http://edamontology.org/data_2540": "Data index data",
+ "http://edamontology.org/data_2563": "Amino acid name (single letter)",
+ "http://edamontology.org/data_2564": "Amino acid name (three letter)",
+ "http://edamontology.org/data_2565": "Amino acid name (full name)",
+ "http://edamontology.org/data_2576": "Toxin identifier",
+ "http://edamontology.org/data_2578": "ArachnoServer ID",
+ "http://edamontology.org/data_2579": "Expressed gene list",
+ "http://edamontology.org/data_2580": "BindingDB Monomer ID",
+ "http://edamontology.org/data_2581": "GO concept name",
+ "http://edamontology.org/data_2582": "GO concept ID (biological process)",
+ "http://edamontology.org/data_2583": "GO concept ID (molecular function)",
+ "http://edamontology.org/data_2584": "GO concept name (cellular component)",
+ "http://edamontology.org/data_2586": "Northern blot image",
+ "http://edamontology.org/data_2587": "Blot ID",
+ "http://edamontology.org/data_2588": "BlotBase blot ID",
+ "http://edamontology.org/data_2589": "Hierarchy",
+ "http://edamontology.org/data_2590": "Hierarchy identifier",
+ "http://edamontology.org/data_2591": "Brite hierarchy ID",
+ "http://edamontology.org/data_2592": "Cancer type",
+ "http://edamontology.org/data_2593": "BRENDA organism ID",
+ "http://edamontology.org/data_2594": "UniGene taxon",
+ "http://edamontology.org/data_2595": "UTRdb taxon",
+ "http://edamontology.org/data_2596": "Catalogue ID",
+ "http://edamontology.org/data_2597": "CABRI catalogue name",
+ "http://edamontology.org/data_2598": "Secondary structure alignment metadata",
+ "http://edamontology.org/data_2599": "Molecule interaction report",
+ "http://edamontology.org/data_2600": "Pathway or network",
+ "http://edamontology.org/data_2601": "Small molecule data",
+ "http://edamontology.org/data_2602": "Genotype and phenotype data",
+ "http://edamontology.org/data_2603": "Expression data",
+ "http://edamontology.org/data_2605": "Compound ID (KEGG)",
+ "http://edamontology.org/data_2606": "RFAM name",
+ "http://edamontology.org/data_2608": "Reaction ID (KEGG)",
+ "http://edamontology.org/data_2609": "Drug ID (KEGG)",
+ "http://edamontology.org/data_2610": "Ensembl ID",
+ "http://edamontology.org/data_2611": "ICD identifier",
+ "http://edamontology.org/data_2612": "Sequence cluster ID (CluSTr)",
+ "http://edamontology.org/data_2613": "KEGG Glycan ID",
+ "http://edamontology.org/data_2614": "TCDB ID",
+ "http://edamontology.org/data_2615": "MINT ID",
+ "http://edamontology.org/data_2616": "DIP ID",
+ "http://edamontology.org/data_2617": "Signaling Gateway protein ID",
+ "http://edamontology.org/data_2618": "Protein modification ID",
+ "http://edamontology.org/data_2619": "RESID ID",
+ "http://edamontology.org/data_2620": "RGD ID",
+ "http://edamontology.org/data_2621": "TAIR accession (protein)",
+ "http://edamontology.org/data_2622": "Compound ID (HMDB)",
+ "http://edamontology.org/data_2625": "LIPID MAPS ID",
+ "http://edamontology.org/data_2626": "PeptideAtlas ID",
+ "http://edamontology.org/data_2627": "Molecular interaction ID",
+ "http://edamontology.org/data_2628": "BioGRID interaction ID",
+ "http://edamontology.org/data_2629": "Enzyme ID (MEROPS)",
+ "http://edamontology.org/data_2630": "Mobile genetic element ID",
+ "http://edamontology.org/data_2631": "ACLAME ID",
+ "http://edamontology.org/data_2632": "SGD ID",
+ "http://edamontology.org/data_2633": "Book ID",
+ "http://edamontology.org/data_2634": "ISBN",
+ "http://edamontology.org/data_2635": "Compound ID (3DMET)",
+ "http://edamontology.org/data_2636": "MatrixDB interaction ID",
+ "http://edamontology.org/data_2637": "cPath ID",
+ "http://edamontology.org/data_2638": "PubChem bioassay ID",
+ "http://edamontology.org/data_2639": "PubChem ID",
+ "http://edamontology.org/data_2641": "Reaction ID (MACie)",
+ "http://edamontology.org/data_2642": "Gene ID (miRBase)",
+ "http://edamontology.org/data_2643": "Gene ID (ZFIN)",
+ "http://edamontology.org/data_2644": "Reaction ID (Rhea)",
+ "http://edamontology.org/data_2645": "Pathway ID (Unipathway)",
+ "http://edamontology.org/data_2646": "Compound ID (ChEMBL)",
+ "http://edamontology.org/data_2647": "LGICdb identifier",
+ "http://edamontology.org/data_2648": "Reaction kinetics ID (SABIO-RK)",
+ "http://edamontology.org/data_2649": "PharmGKB ID",
+ "http://edamontology.org/data_2650": "Pathway ID (PharmGKB)",
+ "http://edamontology.org/data_2651": "Disease ID (PharmGKB)",
+ "http://edamontology.org/data_2652": "Drug ID (PharmGKB)",
+ "http://edamontology.org/data_2653": "Drug ID (TTD)",
+ "http://edamontology.org/data_2654": "Target ID (TTD)",
+ "http://edamontology.org/data_2655": "Cell type identifier",
+ "http://edamontology.org/data_2656": "NeuronDB ID",
+ "http://edamontology.org/data_2657": "NeuroMorpho ID",
+ "http://edamontology.org/data_2658": "Compound ID (ChemIDplus)",
+ "http://edamontology.org/data_2659": "Pathway ID (SMPDB)",
+ "http://edamontology.org/data_2660": "BioNumbers ID",
+ "http://edamontology.org/data_2662": "T3DB ID",
+ "http://edamontology.org/data_2663": "Carbohydrate identifier",
+ "http://edamontology.org/data_2664": "GlycomeDB ID",
+ "http://edamontology.org/data_2665": "LipidBank ID",
+ "http://edamontology.org/data_2666": "CDD ID",
+ "http://edamontology.org/data_2667": "MMDB ID",
+ "http://edamontology.org/data_2668": "iRefIndex ID",
+ "http://edamontology.org/data_2669": "ModelDB ID",
+ "http://edamontology.org/data_2670": "Pathway ID (DQCS)",
+ "http://edamontology.org/data_2671": "Ensembl ID (Homo sapiens)",
+ "http://edamontology.org/data_2672": "Ensembl ID ('Bos taurus')",
+ "http://edamontology.org/data_2673": "Ensembl ID ('Canis familiaris')",
+ "http://edamontology.org/data_2674": "Ensembl ID ('Cavia porcellus')",
+ "http://edamontology.org/data_2675": "Ensembl ID ('Ciona intestinalis')",
+ "http://edamontology.org/data_2676": "Ensembl ID ('Ciona savignyi')",
+ "http://edamontology.org/data_2677": "Ensembl ID ('Danio rerio')",
+ "http://edamontology.org/data_2678": "Ensembl ID ('Dasypus novemcinctus')",
+ "http://edamontology.org/data_2679": "Ensembl ID ('Echinops telfairi')",
+ "http://edamontology.org/data_2680": "Ensembl ID ('Erinaceus europaeus')",
+ "http://edamontology.org/data_2681": "Ensembl ID ('Felis catus')",
+ "http://edamontology.org/data_2682": "Ensembl ID ('Gallus gallus')",
+ "http://edamontology.org/data_2683": "Ensembl ID ('Gasterosteus aculeatus')",
+ "http://edamontology.org/data_2684": "Ensembl ID ('Homo sapiens')",
+ "http://edamontology.org/data_2685": "Ensembl ID ('Loxodonta africana')",
+ "http://edamontology.org/data_2686": "Ensembl ID ('Macaca mulatta')",
+ "http://edamontology.org/data_2687": "Ensembl ID ('Monodelphis domestica')",
+ "http://edamontology.org/data_2688": "Ensembl ID ('Mus musculus')",
+ "http://edamontology.org/data_2689": "Ensembl ID ('Myotis lucifugus')",
+ "http://edamontology.org/data_2690": "Ensembl ID (\"Ornithorhynchus anatinus\")",
+ "http://edamontology.org/data_2691": "Ensembl ID ('Oryctolagus cuniculus')",
+ "http://edamontology.org/data_2692": "Ensembl ID ('Oryzias latipes')",
+ "http://edamontology.org/data_2693": "Ensembl ID ('Otolemur garnettii')",
+ "http://edamontology.org/data_2694": "Ensembl ID ('Pan troglodytes')",
+ "http://edamontology.org/data_2695": "Ensembl ID ('Rattus norvegicus')",
+ "http://edamontology.org/data_2696": "Ensembl ID ('Spermophilus tridecemlineatus')",
+ "http://edamontology.org/data_2697": "Ensembl ID ('Takifugu rubripes')",
+ "http://edamontology.org/data_2698": "Ensembl ID ('Tupaia belangeri')",
+ "http://edamontology.org/data_2699": "Ensembl ID ('Xenopus tropicalis')",
+ "http://edamontology.org/data_2700": "CATH identifier",
+ "http://edamontology.org/data_2701": "CATH node ID (family)",
+ "http://edamontology.org/data_2702": "Enzyme ID (CAZy)",
+ "http://edamontology.org/data_2704": "Clone ID (IMAGE)",
+ "http://edamontology.org/data_2705": "GO concept ID (cellular component)",
+ "http://edamontology.org/data_2706": "Chromosome name (BioCyc)",
+ "http://edamontology.org/data_2709": "CleanEx entry name",
+ "http://edamontology.org/data_2710": "CleanEx dataset code",
+ "http://edamontology.org/data_2711": "Genome report",
+ "http://edamontology.org/data_2713": "Protein ID (CORUM)",
+ "http://edamontology.org/data_2714": "CDD PSSM-ID",
+ "http://edamontology.org/data_2715": "Protein ID (CuticleDB)",
+ "http://edamontology.org/data_2716": "DBD ID",
+ "http://edamontology.org/data_2717": "Oligonucleotide probe annotation",
+ "http://edamontology.org/data_2718": "Oligonucleotide ID",
+ "http://edamontology.org/data_2719": "dbProbe ID",
+ "http://edamontology.org/data_2720": "Dinucleotide property",
+ "http://edamontology.org/data_2721": "DiProDB ID",
+ "http://edamontology.org/data_2722": "Protein features report (disordered structure)",
+ "http://edamontology.org/data_2723": "Protein ID (DisProt)",
+ "http://edamontology.org/data_2724": "Embryo report",
+ "http://edamontology.org/data_2725": "Ensembl transcript ID",
+ "http://edamontology.org/data_2726": "Inhibitor annotation",
+ "http://edamontology.org/data_2727": "Promoter ID",
+ "http://edamontology.org/data_2728": "EST accession",
+ "http://edamontology.org/data_2729": "COGEME EST ID",
+ "http://edamontology.org/data_2730": "COGEME unisequence ID",
+ "http://edamontology.org/data_2731": "Protein family ID (GeneFarm)",
+ "http://edamontology.org/data_2732": "Family name",
+ "http://edamontology.org/data_2733": "Genus name (virus)",
+ "http://edamontology.org/data_2734": "Family name (virus)",
+ "http://edamontology.org/data_2735": "Database name (SwissRegulon)",
+ "http://edamontology.org/data_2736": "Sequence feature ID (SwissRegulon)",
+ "http://edamontology.org/data_2737": "FIG ID",
+ "http://edamontology.org/data_2738": "Gene ID (Xenbase)",
+ "http://edamontology.org/data_2739": "Gene ID (Genolist)",
+ "http://edamontology.org/data_2740": "Gene name (Genolist)",
+ "http://edamontology.org/data_2741": "ABS ID",
+ "http://edamontology.org/data_2742": "AraC-XylS ID",
+ "http://edamontology.org/data_2743": "Gene name (HUGO)",
+ "http://edamontology.org/data_2744": "Locus ID (PseudoCAP)",
+ "http://edamontology.org/data_2745": "Locus ID (UTR)",
+ "http://edamontology.org/data_2746": "MonosaccharideDB ID",
+ "http://edamontology.org/data_2747": "Database name (CMD)",
+ "http://edamontology.org/data_2748": "Database name (Osteogenesis)",
+ "http://edamontology.org/data_2749": "Genome identifier",
+ "http://edamontology.org/data_2751": "GenomeReviews ID",
+ "http://edamontology.org/data_2752": "GlycoMap ID",
+ "http://edamontology.org/data_2753": "Carbohydrate conformational map",
+ "http://edamontology.org/data_2755": "Transcription factor name",
+ "http://edamontology.org/data_2756": "TCID",
+ "http://edamontology.org/data_2757": "Pfam domain name",
+ "http://edamontology.org/data_2758": "Pfam clan ID",
+ "http://edamontology.org/data_2759": "Gene ID (VectorBase)",
+ "http://edamontology.org/data_2761": "UTRSite ID",
+ "http://edamontology.org/data_2762": "Sequence signature report",
+ "http://edamontology.org/data_2763": "Locus annotation",
+ "http://edamontology.org/data_2764": "Protein name (UniProt)",
+ "http://edamontology.org/data_2765": "Term ID list",
+ "http://edamontology.org/data_2766": "HAMAP ID",
+ "http://edamontology.org/data_2767": "Identifier with metadata",
+ "http://edamontology.org/data_2768": "Gene symbol annotation",
+ "http://edamontology.org/data_2769": "Transcript ID",
+ "http://edamontology.org/data_2770": "HIT ID",
+ "http://edamontology.org/data_2771": "HIX ID",
+ "http://edamontology.org/data_2772": "HPA antibody id",
+ "http://edamontology.org/data_2773": "IMGT/HLA ID",
+ "http://edamontology.org/data_2774": "Gene ID (JCVI)",
+ "http://edamontology.org/data_2775": "Kinase name",
+ "http://edamontology.org/data_2776": "ConsensusPathDB entity ID",
+ "http://edamontology.org/data_2777": "ConsensusPathDB entity name",
+ "http://edamontology.org/data_2778": "CCAP strain number",
+ "http://edamontology.org/data_2779": "Stock number",
+ "http://edamontology.org/data_2780": "Stock number (TAIR)",
+ "http://edamontology.org/data_2781": "REDIdb ID",
+ "http://edamontology.org/data_2782": "SMART domain name",
+ "http://edamontology.org/data_2783": "Protein family ID (PANTHER)",
+ "http://edamontology.org/data_2784": "RNAVirusDB ID",
+ "http://edamontology.org/data_2785": "Virus ID",
+ "http://edamontology.org/data_2786": "NCBI Genome Project ID",
+ "http://edamontology.org/data_2787": "NCBI genome accession",
+ "http://edamontology.org/data_2788": "Sequence profile data",
+ "http://edamontology.org/data_2789": "Protein ID (TopDB)",
+ "http://edamontology.org/data_2790": "Gel ID",
+ "http://edamontology.org/data_2791": "Reference map name (SWISS-2DPAGE)",
+ "http://edamontology.org/data_2792": "Protein ID (PeroxiBase)",
+ "http://edamontology.org/data_2793": "SISYPHUS ID",
+ "http://edamontology.org/data_2794": "ORF ID",
+ "http://edamontology.org/data_2795": "ORF identifier",
+ "http://edamontology.org/data_2796": "Linucs ID",
+ "http://edamontology.org/data_2797": "Protein ID (LGICdb)",
+ "http://edamontology.org/data_2798": "MaizeDB ID",
+ "http://edamontology.org/data_2799": "Gene ID (MfunGD)",
+ "http://edamontology.org/data_2800": "Orpha number",
+ "http://edamontology.org/data_2802": "Protein ID (EcID)",
+ "http://edamontology.org/data_2803": "Clone ID (RefSeq)",
+ "http://edamontology.org/data_2804": "Protein ID (ConoServer)",
+ "http://edamontology.org/data_2805": "GeneSNP ID",
+ "http://edamontology.org/data_2812": "Lipid identifier",
+ "http://edamontology.org/data_2831": "Databank",
+ "http://edamontology.org/data_2832": "Web portal",
+ "http://edamontology.org/data_2835": "Gene ID (VBASE2)",
+ "http://edamontology.org/data_2836": "DPVweb ID",
+ "http://edamontology.org/data_2837": "Pathway ID (BioSystems)",
+ "http://edamontology.org/data_2838": "Experimental data (proteomics)",
+ "http://edamontology.org/data_2849": "Abstract",
+ "http://edamontology.org/data_2850": "Lipid structure",
+ "http://edamontology.org/data_2851": "Drug structure",
+ "http://edamontology.org/data_2852": "Toxin structure",
+ "http://edamontology.org/data_2854": "Position-specific scoring matrix",
+ "http://edamontology.org/data_2855": "Distance matrix",
+ "http://edamontology.org/data_2856": "Structural distance matrix",
+ "http://edamontology.org/data_2857": "Article metadata",
+ "http://edamontology.org/data_2858": "Ontology concept",
+ "http://edamontology.org/data_2865": "Codon usage bias",
+ "http://edamontology.org/data_2866": "Northern blot report",
+ "http://edamontology.org/data_2870": "Radiation hybrid map",
+ "http://edamontology.org/data_2872": "ID list",
+ "http://edamontology.org/data_2873": "Phylogenetic gene frequencies data",
+ "http://edamontology.org/data_2874": "Sequence set (polymorphic)",
+ "http://edamontology.org/data_2875": "DRCAT resource",
+ "http://edamontology.org/data_2877": "Protein complex",
+ "http://edamontology.org/data_2878": "Protein structural motif",
+ "http://edamontology.org/data_2879": "Lipid report",
+ "http://edamontology.org/data_2880": "Secondary structure image",
+ "http://edamontology.org/data_2881": "Secondary structure report",
+ "http://edamontology.org/data_2882": "DNA features",
+ "http://edamontology.org/data_2883": "RNA features report",
+ "http://edamontology.org/data_2884": "Plot",
+ "http://edamontology.org/data_2886": "Protein sequence record",
+ "http://edamontology.org/data_2887": "Nucleic acid sequence record",
+ "http://edamontology.org/data_2888": "Protein sequence record (full)",
+ "http://edamontology.org/data_2889": "Nucleic acid sequence record (full)",
+ "http://edamontology.org/data_2891": "Biological model accession",
+ "http://edamontology.org/data_2892": "Cell type name",
+ "http://edamontology.org/data_2893": "Cell type accession",
+ "http://edamontology.org/data_2894": "Compound accession",
+ "http://edamontology.org/data_2895": "Drug accession",
+ "http://edamontology.org/data_2896": "Toxin name",
+ "http://edamontology.org/data_2897": "Toxin accession",
+ "http://edamontology.org/data_2898": "Monosaccharide accession",
+ "http://edamontology.org/data_2899": "Drug name",
+ "http://edamontology.org/data_2900": "Carbohydrate accession",
+ "http://edamontology.org/data_2901": "Molecule accession",
+ "http://edamontology.org/data_2902": "Data resource definition accession",
+ "http://edamontology.org/data_2903": "Genome accession",
+ "http://edamontology.org/data_2904": "Map accession",
+ "http://edamontology.org/data_2905": "Lipid accession",
+ "http://edamontology.org/data_2906": "Peptide ID",
+ "http://edamontology.org/data_2907": "Protein accession",
+ "http://edamontology.org/data_2908": "Organism accession",
+ "http://edamontology.org/data_2909": "Organism name",
+ "http://edamontology.org/data_2910": "Protein family accession",
+ "http://edamontology.org/data_2911": "Transcription factor accession",
+ "http://edamontology.org/data_2912": "Strain accession",
+ "http://edamontology.org/data_2913": "Virus identifier",
+ "http://edamontology.org/data_2914": "Sequence features metadata",
+ "http://edamontology.org/data_2915": "Gramene identifier",
+ "http://edamontology.org/data_2916": "DDBJ accession",
+ "http://edamontology.org/data_2917": "ConsensusPathDB identifier",
+ "http://edamontology.org/data_2925": "Sequence data",
+ "http://edamontology.org/data_2927": "Codon usage",
+ "http://edamontology.org/data_2954": "Article report",
+ "http://edamontology.org/data_2955": "Sequence report",
+ "http://edamontology.org/data_2956": "Protein secondary structure",
+ "http://edamontology.org/data_2957": "Hopp and Woods plot",
+ "http://edamontology.org/data_2958": "Nucleic acid melting curve",
+ "http://edamontology.org/data_2959": "Nucleic acid probability profile",
+ "http://edamontology.org/data_2960": "Nucleic acid temperature profile",
+ "http://edamontology.org/data_2961": "Gene regulatory network report",
+ "http://edamontology.org/data_2965": "2D PAGE gel report",
+ "http://edamontology.org/data_2966": "Oligonucleotide probe sets annotation",
+ "http://edamontology.org/data_2967": "Microarray image",
+ "http://edamontology.org/data_2968": "Image",
+ "http://edamontology.org/data_2969": "Sequence image",
+ "http://edamontology.org/data_2970": "Protein hydropathy data",
+ "http://edamontology.org/data_2971": "Workflow data",
+ "http://edamontology.org/data_2972": "Workflow",
+ "http://edamontology.org/data_2973": "Secondary structure data",
+ "http://edamontology.org/data_2974": "Protein sequence (raw)",
+ "http://edamontology.org/data_2975": "Nucleic acid sequence (raw)",
+ "http://edamontology.org/data_2976": "Protein sequence",
+ "http://edamontology.org/data_2977": "Nucleic acid sequence",
+ "http://edamontology.org/data_2978": "Reaction data",
+ "http://edamontology.org/data_2979": "Peptide property",
+ "http://edamontology.org/data_2980": "Protein classification",
+ "http://edamontology.org/data_2981": "Sequence motif data",
+ "http://edamontology.org/data_2982": "Sequence profile data",
+ "http://edamontology.org/data_2983": "Pathway or network data",
+ "http://edamontology.org/data_2984": "Pathway or network report",
+ "http://edamontology.org/data_2985": "Nucleic acid thermodynamic data",
+ "http://edamontology.org/data_2986": "Nucleic acid classification",
+ "http://edamontology.org/data_2987": "Classification report",
+ "http://edamontology.org/data_2989": "Protein features report (key folding sites)",
+ "http://edamontology.org/data_2991": "Protein geometry data",
+ "http://edamontology.org/data_2992": "Protein structure image",
+ "http://edamontology.org/data_2994": "Phylogenetic character weights",
+ "http://edamontology.org/data_3002": "Annotation track",
+ "http://edamontology.org/data_3021": "UniProt accession",
+ "http://edamontology.org/data_3022": "NCBI genetic code ID",
+ "http://edamontology.org/data_3025": "Ontology concept identifier",
+ "http://edamontology.org/data_3026": "GO concept name (biological process)",
+ "http://edamontology.org/data_3027": "GO concept name (molecular function)",
+ "http://edamontology.org/data_3028": "Taxonomy",
+ "http://edamontology.org/data_3029": "Protein ID (EMBL/GenBank/DDBJ)",
+ "http://edamontology.org/data_3031": "Core data",
+ "http://edamontology.org/data_3034": "Sequence feature identifier",
+ "http://edamontology.org/data_3035": "Structure identifier",
+ "http://edamontology.org/data_3036": "Matrix identifier",
+ "http://edamontology.org/data_3085": "Protein sequence composition",
+ "http://edamontology.org/data_3086": "Nucleic acid sequence composition (report)",
+ "http://edamontology.org/data_3101": "Protein domain classification node",
+ "http://edamontology.org/data_3102": "CAS number",
+ "http://edamontology.org/data_3103": "ATC code",
+ "http://edamontology.org/data_3104": "UNII",
+ "http://edamontology.org/data_3105": "Geotemporal metadata",
+ "http://edamontology.org/data_3106": "System metadata",
+ "http://edamontology.org/data_3107": "Sequence feature name",
+ "http://edamontology.org/data_3108": "Experimental measurement",
+ "http://edamontology.org/data_3110": "Raw microarray data",
+ "http://edamontology.org/data_3111": "Processed microarray data",
+ "http://edamontology.org/data_3112": "Gene expression matrix",
+ "http://edamontology.org/data_3113": "Sample annotation",
+ "http://edamontology.org/data_3115": "Microarray metadata",
+ "http://edamontology.org/data_3116": "Microarray protocol annotation",
+ "http://edamontology.org/data_3117": "Microarray hybridisation data",
+ "http://edamontology.org/data_3119": "Sequence features (compositionally-biased regions)",
+ "http://edamontology.org/data_3122": "Nucleic acid features (difference and change)",
+ "http://edamontology.org/data_3128": "Nucleic acid structure report",
+ "http://edamontology.org/data_3129": "Protein features report (repeats)",
+ "http://edamontology.org/data_3130": "Sequence motif matches (protein)",
+ "http://edamontology.org/data_3131": "Sequence motif matches (nucleic acid)",
+ "http://edamontology.org/data_3132": "Nucleic acid features (d-loop)",
+ "http://edamontology.org/data_3133": "Nucleic acid features (stem loop)",
+ "http://edamontology.org/data_3134": "Gene transcript report",
+ "http://edamontology.org/data_3137": "Non-coding RNA",
+ "http://edamontology.org/data_3138": "Transcriptional features (report)",
+ "http://edamontology.org/data_3140": "Nucleic acid features (immunoglobulin gene structure)",
+ "http://edamontology.org/data_3141": "SCOP class",
+ "http://edamontology.org/data_3142": "SCOP fold",
+ "http://edamontology.org/data_3143": "SCOP superfamily",
+ "http://edamontology.org/data_3144": "SCOP family",
+ "http://edamontology.org/data_3145": "SCOP protein",
+ "http://edamontology.org/data_3146": "SCOP species",
+ "http://edamontology.org/data_3147": "Mass spectrometry experiment",
+ "http://edamontology.org/data_3148": "Gene family report",
+ "http://edamontology.org/data_3153": "Protein image",
+ "http://edamontology.org/data_3154": "Protein alignment",
+ "http://edamontology.org/data_3165": "NGS experiment",
+ "http://edamontology.org/data_3181": "Sequence assembly report",
+ "http://edamontology.org/data_3210": "Genome index",
+ "http://edamontology.org/data_3231": "GWAS report",
+ "http://edamontology.org/data_3236": "Cytoband position",
+ "http://edamontology.org/data_3238": "Cell type ontology ID",
+ "http://edamontology.org/data_3241": "Kinetic model",
+ "http://edamontology.org/data_3264": "COSMIC ID",
+ "http://edamontology.org/data_3265": "HGMD ID",
+ "http://edamontology.org/data_3266": "Sequence assembly ID",
+ "http://edamontology.org/data_3268": "Sequence feature type",
+ "http://edamontology.org/data_3269": "Gene homology (report)",
+ "http://edamontology.org/data_3270": "Ensembl gene tree ID",
+ "http://edamontology.org/data_3271": "Gene tree",
+ "http://edamontology.org/data_3272": "Species tree",
+ "http://edamontology.org/data_3273": "Sample ID",
+ "http://edamontology.org/data_3274": "MGI accession",
+ "http://edamontology.org/data_3275": "Phenotype name",
+ "http://edamontology.org/data_3354": "Transition matrix",
+ "http://edamontology.org/data_3355": "Emission matrix",
+ "http://edamontology.org/data_3356": "Hidden Markov model",
+ "http://edamontology.org/data_3358": "Format identifier",
+ "http://edamontology.org/data_3424": "Raw image",
+ "http://edamontology.org/data_3425": "Carbohydrate property",
+ "http://edamontology.org/data_3426": "Proteomics experiment report",
+ "http://edamontology.org/data_3427": "RNAi report",
+ "http://edamontology.org/data_3428": "Simulation experiment report",
+ "http://edamontology.org/data_3442": "MRI image",
+ "http://edamontology.org/data_3449": "Cell migration track image",
+ "http://edamontology.org/data_3451": "Rate of association",
+ "http://edamontology.org/data_3479": "Gene order",
+ "http://edamontology.org/data_3483": "Spectrum",
+ "http://edamontology.org/data_3488": "NMR spectrum",
+ "http://edamontology.org/data_3490": "Chemical structure sketch",
+ "http://edamontology.org/data_3492": "Nucleic acid signature",
+ "http://edamontology.org/data_3494": "DNA sequence",
+ "http://edamontology.org/data_3495": "RNA sequence",
+ "http://edamontology.org/data_3496": "RNA sequence (raw)",
+ "http://edamontology.org/data_3497": "DNA sequence (raw)",
+ "http://edamontology.org/data_3498": "Sequence variations",
+ "http://edamontology.org/data_3505": "Bibliography",
+ "http://edamontology.org/data_3509": "Ontology mapping",
+ "http://edamontology.org/data_3546": "Image metadata",
+ "http://edamontology.org/data_3558": "Clinical trial report",
+ "http://edamontology.org/data_3567": "Reference sample report",
+ "http://edamontology.org/data_3568": "Gene Expression Atlas Experiment ID",
+ "http://edamontology.org/data_3667": "Disease identifier",
+ "http://edamontology.org/data_3668": "Disease name",
+ "http://edamontology.org/data_3669": "Training material",
+ "http://edamontology.org/data_3670": "Online course",
+ "http://edamontology.org/data_3671": "Text",
+ "http://edamontology.org/data_3707": "Biodiversity data",
+ "http://edamontology.org/data_3716": "Biosafety report",
+ "http://edamontology.org/data_3717": "Isolation report",
+ "http://edamontology.org/data_3718": "Pathogenicity report",
+ "http://edamontology.org/data_3719": "Biosafety classification",
+ "http://edamontology.org/data_3720": "Geographic location",
+ "http://edamontology.org/data_3721": "Isolation source",
+ "http://edamontology.org/data_3722": "Physiology parameter",
+ "http://edamontology.org/data_3723": "Morphology parameter",
+ "http://edamontology.org/data_3724": "Cultivation parameter",
+ "http://edamontology.org/data_3732": "Sequencing metadata name",
+ "http://edamontology.org/data_3733": "Flow cell identifier",
+ "http://edamontology.org/data_3734": "Lane identifier",
+ "http://edamontology.org/data_3735": "Run number",
+ "http://edamontology.org/data_3736": "Ecological data",
+ "http://edamontology.org/data_3737": "Alpha diversity data",
+ "http://edamontology.org/data_3738": "Beta diversity data",
+ "http://edamontology.org/data_3739": "Gamma diversity data",
+ "http://edamontology.org/data_3743": "Ordination plot",
+ "http://edamontology.org/data_3753": "Over-representation data",
+ "http://edamontology.org/data_3754": "GO-term enrichment data",
+ "http://edamontology.org/data_3756": "Localisation score",
+ "http://edamontology.org/data_3757": "Unimod ID",
+ "http://edamontology.org/data_3759": "ProteomeXchange ID",
+ "http://edamontology.org/data_3768": "Clustered expression profiles",
+ "http://edamontology.org/data_3769": "BRENDA ontology concept ID",
+ "http://edamontology.org/data_3779": "Annotated text",
+ "http://edamontology.org/data_3786": "Query script",
+ "http://edamontology.org/data_3805": "3D EM Map",
+ "http://edamontology.org/data_3806": "3D EM Mask",
+ "http://edamontology.org/data_3807": "EM Movie",
+ "http://edamontology.org/data_3808": "EM Micrograph",
+ "http://edamontology.org/data_3842": "Molecular simulation data",
+ "http://edamontology.org/data_3856": "RNA central ID",
+ "http://edamontology.org/data_3861": "Electronic health record",
+ "http://edamontology.org/data_3869": "Simulation",
+ "http://edamontology.org/data_3870": "Trajectory data",
+ "http://edamontology.org/data_3871": "Forcefield parameters",
+ "http://edamontology.org/data_3872": "Topology data",
+ "http://edamontology.org/data_3905": "Histogram",
+ "http://edamontology.org/data_3914": "Quality control report",
+ "http://edamontology.org/data_3917": "Count matrix",
+ "http://edamontology.org/data_3924": "DNA structure alignment",
+ "http://edamontology.org/data_3932": "Q-value",
+ "http://edamontology.org/data_3949": "Profile HMM",
+ "http://edamontology.org/data_3952": "Pathway ID (WikiPathways)",
+ "http://edamontology.org/data_3953": "Pathway overrepresentation data",
+ "http://edamontology.org/format_1196": "SMILES",
+ "http://edamontology.org/format_1197": "InChI",
+ "http://edamontology.org/format_1198": "mf",
+ "http://edamontology.org/format_1199": "InChIKey",
+ "http://edamontology.org/format_1200": "smarts",
+ "http://edamontology.org/format_1206": "unambiguous pure",
+ "http://edamontology.org/format_1207": "nucleotide",
+ "http://edamontology.org/format_1208": "protein",
+ "http://edamontology.org/format_1209": "consensus",
+ "http://edamontology.org/format_1210": "pure nucleotide",
+ "http://edamontology.org/format_1211": "unambiguous pure nucleotide",
+ "http://edamontology.org/format_1212": "dna",
+ "http://edamontology.org/format_1213": "rna",
+ "http://edamontology.org/format_1214": "unambiguous pure dna",
+ "http://edamontology.org/format_1215": "pure dna",
+ "http://edamontology.org/format_1216": "unambiguous pure rna sequence",
+ "http://edamontology.org/format_1217": "pure rna",
+ "http://edamontology.org/format_1218": "unambiguous pure protein",
+ "http://edamontology.org/format_1219": "pure protein",
+ "http://edamontology.org/format_1228": "UniGene entry format",
+ "http://edamontology.org/format_1247": "COG sequence cluster format",
+ "http://edamontology.org/format_1248": "EMBL feature location",
+ "http://edamontology.org/format_1295": "quicktandem",
+ "http://edamontology.org/format_1296": "Sanger inverted repeats",
+ "http://edamontology.org/format_1297": "EMBOSS repeat",
+ "http://edamontology.org/format_1316": "est2genome format",
+ "http://edamontology.org/format_1318": "restrict format",
+ "http://edamontology.org/format_1319": "restover format",
+ "http://edamontology.org/format_1320": "REBASE restriction sites",
+ "http://edamontology.org/format_1332": "FASTA search results format",
+ "http://edamontology.org/format_1333": "BLAST results",
+ "http://edamontology.org/format_1334": "mspcrunch",
+ "http://edamontology.org/format_1335": "Smith-Waterman format",
+ "http://edamontology.org/format_1336": "dhf",
+ "http://edamontology.org/format_1337": "lhf",
+ "http://edamontology.org/format_1341": "InterPro hits format",
+ "http://edamontology.org/format_1342": "InterPro protein view report format",
+ "http://edamontology.org/format_1343": "InterPro match table format",
+ "http://edamontology.org/format_1349": "HMMER Dirichlet prior",
+ "http://edamontology.org/format_1350": "MEME Dirichlet prior",
+ "http://edamontology.org/format_1351": "HMMER emission and transition",
+ "http://edamontology.org/format_1356": "prosite-pattern",
+ "http://edamontology.org/format_1357": "EMBOSS sequence pattern",
+ "http://edamontology.org/format_1360": "meme-motif",
+ "http://edamontology.org/format_1366": "prosite-profile",
+ "http://edamontology.org/format_1367": "JASPAR format",
+ "http://edamontology.org/format_1369": "MEME background Markov model",
+ "http://edamontology.org/format_1370": "HMMER format",
+ "http://edamontology.org/format_1391": "HMMER-aln",
+ "http://edamontology.org/format_1392": "DIALIGN format",
+ "http://edamontology.org/format_1393": "daf",
+ "http://edamontology.org/format_1419": "Sequence-MEME profile alignment",
+ "http://edamontology.org/format_1421": "HMMER profile alignment (sequences versus HMMs)",
+ "http://edamontology.org/format_1422": "HMMER profile alignment (HMM versus sequences)",
+ "http://edamontology.org/format_1423": "Phylip distance matrix",
+ "http://edamontology.org/format_1424": "ClustalW dendrogram",
+ "http://edamontology.org/format_1425": "Phylip tree raw",
+ "http://edamontology.org/format_1430": "Phylip continuous quantitative characters",
+ "http://edamontology.org/format_1431": "Phylogenetic property values format",
+ "http://edamontology.org/format_1432": "Phylip character frequencies format",
+ "http://edamontology.org/format_1433": "Phylip discrete states format",
+ "http://edamontology.org/format_1434": "Phylip cliques format",
+ "http://edamontology.org/format_1435": "Phylip tree format",
+ "http://edamontology.org/format_1436": "TreeBASE format",
+ "http://edamontology.org/format_1437": "TreeFam format",
+ "http://edamontology.org/format_1445": "Phylip tree distance format",
+ "http://edamontology.org/format_1454": "dssp",
+ "http://edamontology.org/format_1455": "hssp",
+ "http://edamontology.org/format_1457": "Dot-bracket format",
+ "http://edamontology.org/format_1458": "Vienna local RNA secondary structure format",
+ "http://edamontology.org/format_1475": "PDB database entry format",
+ "http://edamontology.org/format_1476": "PDB",
+ "http://edamontology.org/format_1477": "mmCIF",
+ "http://edamontology.org/format_1478": "PDBML",
+ "http://edamontology.org/format_1500": "Domainatrix 3D-1D scoring matrix format",
+ "http://edamontology.org/format_1504": "aaindex",
+ "http://edamontology.org/format_1511": "IntEnz enzyme report format",
+ "http://edamontology.org/format_1512": "BRENDA enzyme report format",
+ "http://edamontology.org/format_1513": "KEGG REACTION enzyme report format",
+ "http://edamontology.org/format_1514": "KEGG ENZYME enzyme report format",
+ "http://edamontology.org/format_1515": "REBASE proto enzyme report format",
+ "http://edamontology.org/format_1516": "REBASE withrefm enzyme report format",
+ "http://edamontology.org/format_1551": "Pcons report format",
+ "http://edamontology.org/format_1552": "ProQ report format",
+ "http://edamontology.org/format_1563": "SMART domain assignment report format",
+ "http://edamontology.org/format_1568": "BIND entry format",
+ "http://edamontology.org/format_1569": "IntAct entry format",
+ "http://edamontology.org/format_1570": "InterPro entry format",
+ "http://edamontology.org/format_1571": "InterPro entry abstract format",
+ "http://edamontology.org/format_1572": "Gene3D entry format",
+ "http://edamontology.org/format_1573": "PIRSF entry format",
+ "http://edamontology.org/format_1574": "PRINTS entry format",
+ "http://edamontology.org/format_1575": "Panther Families and HMMs entry format",
+ "http://edamontology.org/format_1576": "Pfam entry format",
+ "http://edamontology.org/format_1577": "SMART entry format",
+ "http://edamontology.org/format_1578": "Superfamily entry format",
+ "http://edamontology.org/format_1579": "TIGRFam entry format",
+ "http://edamontology.org/format_1580": "ProDom entry format",
+ "http://edamontology.org/format_1581": "FSSP entry format",
+ "http://edamontology.org/format_1582": "findkm",
+ "http://edamontology.org/format_1603": "Ensembl gene report format",
+ "http://edamontology.org/format_1604": "DictyBase gene report format",
+ "http://edamontology.org/format_1605": "CGD gene report format",
+ "http://edamontology.org/format_1606": "DragonDB gene report format",
+ "http://edamontology.org/format_1607": "EcoCyc gene report format",
+ "http://edamontology.org/format_1608": "FlyBase gene report format",
+ "http://edamontology.org/format_1609": "Gramene gene report format",
+ "http://edamontology.org/format_1610": "KEGG GENES gene report format",
+ "http://edamontology.org/format_1611": "MaizeGDB gene report format",
+ "http://edamontology.org/format_1612": "MGD gene report format",
+ "http://edamontology.org/format_1613": "RGD gene report format",
+ "http://edamontology.org/format_1614": "SGD gene report format",
+ "http://edamontology.org/format_1615": "GeneDB gene report format",
+ "http://edamontology.org/format_1616": "TAIR gene report format",
+ "http://edamontology.org/format_1617": "WormBase gene report format",
+ "http://edamontology.org/format_1618": "ZFIN gene report format",
+ "http://edamontology.org/format_1619": "TIGR gene report format",
+ "http://edamontology.org/format_1620": "dbSNP polymorphism report format",
+ "http://edamontology.org/format_1623": "OMIM entry format",
+ "http://edamontology.org/format_1624": "HGVbase entry format",
+ "http://edamontology.org/format_1625": "HIVDB entry format",
+ "http://edamontology.org/format_1626": "KEGG DISEASE entry format",
+ "http://edamontology.org/format_1627": "Primer3 primer",
+ "http://edamontology.org/format_1628": "ABI",
+ "http://edamontology.org/format_1629": "mira",
+ "http://edamontology.org/format_1630": "CAF",
+ "http://edamontology.org/format_1631": "EXP",
+ "http://edamontology.org/format_1632": "SCF",
+ "http://edamontology.org/format_1633": "PHD",
+ "http://edamontology.org/format_1637": "dat",
+ "http://edamontology.org/format_1638": "cel",
+ "http://edamontology.org/format_1639": "affymetrix",
+ "http://edamontology.org/format_1640": "ArrayExpress entry format",
+ "http://edamontology.org/format_1641": "affymetrix-exp",
+ "http://edamontology.org/format_1644": "CHP",
+ "http://edamontology.org/format_1645": "EMDB entry format",
+ "http://edamontology.org/format_1647": "KEGG PATHWAY entry format",
+ "http://edamontology.org/format_1648": "MetaCyc entry format",
+ "http://edamontology.org/format_1649": "HumanCyc entry format",
+ "http://edamontology.org/format_1650": "INOH entry format",
+ "http://edamontology.org/format_1651": "PATIKA entry format",
+ "http://edamontology.org/format_1652": "Reactome entry format",
+ "http://edamontology.org/format_1653": "aMAZE entry format",
+ "http://edamontology.org/format_1654": "CPDB entry format",
+ "http://edamontology.org/format_1655": "Panther Pathways entry format",
+ "http://edamontology.org/format_1665": "Taverna workflow format",
+ "http://edamontology.org/format_1666": "BioModel mathematical model format",
+ "http://edamontology.org/format_1697": "KEGG LIGAND entry format",
+ "http://edamontology.org/format_1698": "KEGG COMPOUND entry format",
+ "http://edamontology.org/format_1699": "KEGG PLANT entry format",
+ "http://edamontology.org/format_1700": "KEGG GLYCAN entry format",
+ "http://edamontology.org/format_1701": "PubChem entry format",
+ "http://edamontology.org/format_1702": "ChemSpider entry format",
+ "http://edamontology.org/format_1703": "ChEBI entry format",
+ "http://edamontology.org/format_1704": "MSDchem ligand dictionary entry format",
+ "http://edamontology.org/format_1705": "HET group dictionary entry format",
+ "http://edamontology.org/format_1706": "KEGG DRUG entry format",
+ "http://edamontology.org/format_1734": "PubMed citation",
+ "http://edamontology.org/format_1735": "Medline Display Format",
+ "http://edamontology.org/format_1736": "CiteXplore-core",
+ "http://edamontology.org/format_1737": "CiteXplore-all",
+ "http://edamontology.org/format_1739": "pmc",
+ "http://edamontology.org/format_1740": "iHOP format",
+ "http://edamontology.org/format_1741": "OSCAR format",
+ "http://edamontology.org/format_1747": "PDB atom record format",
+ "http://edamontology.org/format_1760": "CATH chain report format",
+ "http://edamontology.org/format_1761": "CATH PDB report format",
+ "http://edamontology.org/format_1782": "NCBI gene report format",
+ "http://edamontology.org/format_1808": "GeneIlluminator gene report format",
+ "http://edamontology.org/format_1809": "BacMap gene card format",
+ "http://edamontology.org/format_1810": "ColiCard report format",
+ "http://edamontology.org/format_1861": "PlasMapper TextMap",
+ "http://edamontology.org/format_1910": "newick",
+ "http://edamontology.org/format_1911": "TreeCon format",
+ "http://edamontology.org/format_1912": "Nexus format",
+ "http://edamontology.org/format_1915": "Format",
+ "http://edamontology.org/format_1918": "Atomic data format",
+ "http://edamontology.org/format_1919": "Sequence record format",
+ "http://edamontology.org/format_1920": "Sequence feature annotation format",
+ "http://edamontology.org/format_1921": "Alignment format",
+ "http://edamontology.org/format_1923": "acedb",
+ "http://edamontology.org/format_1924": "clustal sequence format",
+ "http://edamontology.org/format_1925": "codata",
+ "http://edamontology.org/format_1926": "dbid",
+ "http://edamontology.org/format_1927": "EMBL format",
+ "http://edamontology.org/format_1928": "Staden experiment format",
+ "http://edamontology.org/format_1929": "FASTA",
+ "http://edamontology.org/format_1930": "FASTQ",
+ "http://edamontology.org/format_1931": "FASTQ-illumina",
+ "http://edamontology.org/format_1932": "FASTQ-sanger",
+ "http://edamontology.org/format_1933": "FASTQ-solexa",
+ "http://edamontology.org/format_1934": "fitch program",
+ "http://edamontology.org/format_1935": "GCG",
+ "http://edamontology.org/format_1936": "GenBank format",
+ "http://edamontology.org/format_1937": "genpept",
+ "http://edamontology.org/format_1938": "GFF2-seq",
+ "http://edamontology.org/format_1939": "GFF3-seq",
+ "http://edamontology.org/format_1940": "giFASTA format",
+ "http://edamontology.org/format_1941": "hennig86",
+ "http://edamontology.org/format_1942": "ig",
+ "http://edamontology.org/format_1943": "igstrict",
+ "http://edamontology.org/format_1944": "jackknifer",
+ "http://edamontology.org/format_1945": "mase format",
+ "http://edamontology.org/format_1946": "mega-seq",
+ "http://edamontology.org/format_1947": "GCG MSF",
+ "http://edamontology.org/format_1948": "nbrf/pir",
+ "http://edamontology.org/format_1949": "nexus-seq",
+ "http://edamontology.org/format_1950": "pdbatom",
+ "http://edamontology.org/format_1951": "pdbatomnuc",
+ "http://edamontology.org/format_1952": "pdbseqresnuc",
+ "http://edamontology.org/format_1953": "pdbseqres",
+ "http://edamontology.org/format_1954": "Pearson format",
+ "http://edamontology.org/format_1955": "phylip sequence format",
+ "http://edamontology.org/format_1956": "phylipnon sequence format",
+ "http://edamontology.org/format_1957": "raw",
+ "http://edamontology.org/format_1958": "refseqp",
+ "http://edamontology.org/format_1959": "selex sequence format",
+ "http://edamontology.org/format_1960": "Staden format",
+ "http://edamontology.org/format_1961": "Stockholm format",
+ "http://edamontology.org/format_1962": "strider format",
+ "http://edamontology.org/format_1963": "UniProtKB format",
+ "http://edamontology.org/format_1964": "plain text format (unformatted)",
+ "http://edamontology.org/format_1965": "treecon sequence format",
+ "http://edamontology.org/format_1966": "ASN.1 sequence format",
+ "http://edamontology.org/format_1967": "DAS format",
+ "http://edamontology.org/format_1968": "dasdna",
+ "http://edamontology.org/format_1969": "debug-seq",
+ "http://edamontology.org/format_1970": "jackknifernon",
+ "http://edamontology.org/format_1971": "meganon sequence format",
+ "http://edamontology.org/format_1972": "NCBI format",
+ "http://edamontology.org/format_1973": "nexusnon",
+ "http://edamontology.org/format_1974": "GFF2",
+ "http://edamontology.org/format_1975": "GFF3",
+ "http://edamontology.org/format_1976": "pir",
+ "http://edamontology.org/format_1977": "swiss feature",
+ "http://edamontology.org/format_1978": "DASGFF",
+ "http://edamontology.org/format_1979": "debug-feat",
+ "http://edamontology.org/format_1980": "EMBL feature",
+ "http://edamontology.org/format_1981": "GenBank feature",
+ "http://edamontology.org/format_1982": "ClustalW format",
+ "http://edamontology.org/format_1983": "debug",
+ "http://edamontology.org/format_1984": "FASTA-aln",
+ "http://edamontology.org/format_1985": "markx0",
+ "http://edamontology.org/format_1986": "markx1",
+ "http://edamontology.org/format_1987": "markx10",
+ "http://edamontology.org/format_1988": "markx2",
+ "http://edamontology.org/format_1989": "markx3",
+ "http://edamontology.org/format_1990": "match",
+ "http://edamontology.org/format_1991": "mega",
+ "http://edamontology.org/format_1992": "meganon",
+ "http://edamontology.org/format_1993": "msf alignment format",
+ "http://edamontology.org/format_1994": "nexus alignment format",
+ "http://edamontology.org/format_1995": "nexusnon alignment format",
+ "http://edamontology.org/format_1996": "pair",
+ "http://edamontology.org/format_1997": "PHYLIP format",
+ "http://edamontology.org/format_1998": "PHYLIP sequential",
+ "http://edamontology.org/format_1999": "scores format",
+ "http://edamontology.org/format_2000": "selex",
+ "http://edamontology.org/format_2001": "EMBOSS simple format",
+ "http://edamontology.org/format_2002": "srs format",
+ "http://edamontology.org/format_2003": "srspair",
+ "http://edamontology.org/format_2004": "T-Coffee format",
+ "http://edamontology.org/format_2005": "TreeCon-seq",
+ "http://edamontology.org/format_2006": "Phylogenetic tree format",
+ "http://edamontology.org/format_2013": "Biological pathway or network format",
+ "http://edamontology.org/format_2014": "Sequence-profile alignment format",
+ "http://edamontology.org/format_2015": "Sequence-profile alignment (HMM) format",
+ "http://edamontology.org/format_2017": "Amino acid index format",
+ "http://edamontology.org/format_2020": "Article format",
+ "http://edamontology.org/format_2021": "Text mining report format",
+ "http://edamontology.org/format_2027": "Enzyme kinetics report format",
+ "http://edamontology.org/format_2030": "Chemical data format",
+ "http://edamontology.org/format_2031": "Gene annotation format",
+ "http://edamontology.org/format_2032": "Workflow format",
+ "http://edamontology.org/format_2033": "Tertiary structure format",
+ "http://edamontology.org/format_2034": "Biological model format",
+ "http://edamontology.org/format_2035": "Chemical formula format",
+ "http://edamontology.org/format_2036": "Phylogenetic character data format",
+ "http://edamontology.org/format_2037": "Phylogenetic continuous quantitative character format",
+ "http://edamontology.org/format_2038": "Phylogenetic discrete states format",
+ "http://edamontology.org/format_2039": "Phylogenetic tree report (cliques) format",
+ "http://edamontology.org/format_2040": "Phylogenetic tree report (invariants) format",
+ "http://edamontology.org/format_2045": "Electron microscopy model format",
+ "http://edamontology.org/format_2049": "Phylogenetic tree report (tree distances) format",
+ "http://edamontology.org/format_2051": "Polymorphism report format",
+ "http://edamontology.org/format_2052": "Protein family report format",
+ "http://edamontology.org/format_2054": "Protein interaction format",
+ "http://edamontology.org/format_2055": "Sequence assembly format",
+ "http://edamontology.org/format_2056": "Microarray experiment data format",
+ "http://edamontology.org/format_2057": "Sequence trace format",
+ "http://edamontology.org/format_2058": "Gene expression report format",
+ "http://edamontology.org/format_2059": "Genotype and phenotype annotation format",
+ "http://edamontology.org/format_2060": "Map format",
+ "http://edamontology.org/format_2061": "Nucleic acid features (primers) format",
+ "http://edamontology.org/format_2062": "Protein report format",
+ "http://edamontology.org/format_2063": "Protein report (enzyme) format",
+ "http://edamontology.org/format_2064": "3D-1D scoring matrix format",
+ "http://edamontology.org/format_2065": "Protein structure report (quality evaluation) format",
+ "http://edamontology.org/format_2066": "Database hits (sequence) format",
+ "http://edamontology.org/format_2067": "Sequence distance matrix format",
+ "http://edamontology.org/format_2068": "Sequence motif format",
+ "http://edamontology.org/format_2069": "Sequence profile format",
+ "http://edamontology.org/format_2072": "Hidden Markov model format",
+ "http://edamontology.org/format_2074": "Dirichlet distribution format",
+ "http://edamontology.org/format_2075": "HMM emission and transition counts format",
+ "http://edamontology.org/format_2076": "RNA secondary structure format",
+ "http://edamontology.org/format_2077": "Protein secondary structure format",
+ "http://edamontology.org/format_2078": "Sequence range format",
+ "http://edamontology.org/format_2094": "pure",
+ "http://edamontology.org/format_2095": "unpure",
+ "http://edamontology.org/format_2096": "unambiguous sequence",
+ "http://edamontology.org/format_2097": "ambiguous",
+ "http://edamontology.org/format_2155": "Sequence features (repeats) format",
+ "http://edamontology.org/format_2158": "Nucleic acid features (restriction sites) format",
+ "http://edamontology.org/format_2159": "Gene features (coding region) format",
+ "http://edamontology.org/format_2170": "Sequence cluster format",
+ "http://edamontology.org/format_2171": "Sequence cluster format (protein)",
+ "http://edamontology.org/format_2172": "Sequence cluster format (nucleic acid)",
+ "http://edamontology.org/format_2175": "Gene cluster format",
+ "http://edamontology.org/format_2181": "EMBL-like (text)",
+ "http://edamontology.org/format_2182": "FASTQ-like format (text)",
+ "http://edamontology.org/format_2183": "EMBLXML",
+ "http://edamontology.org/format_2184": "cdsxml",
+ "http://edamontology.org/format_2185": "insdxml",
+ "http://edamontology.org/format_2186": "geneseq",
+ "http://edamontology.org/format_2187": "UniProt-like (text)",
+ "http://edamontology.org/format_2188": "UniProt format",
+ "http://edamontology.org/format_2189": "ipi",
+ "http://edamontology.org/format_2194": "medline",
+ "http://edamontology.org/format_2195": "Ontology format",
+ "http://edamontology.org/format_2196": "OBO format",
+ "http://edamontology.org/format_2197": "OWL format",
+ "http://edamontology.org/format_2200": "FASTA-like (text)",
+ "http://edamontology.org/format_2202": "Sequence record full format",
+ "http://edamontology.org/format_2203": "Sequence record lite format",
+ "http://edamontology.org/format_2204": "EMBL format (XML)",
+ "http://edamontology.org/format_2205": "GenBank-like format (text)",
+ "http://edamontology.org/format_2206": "Sequence feature table format (text)",
+ "http://edamontology.org/format_2210": "Strain data format",
+ "http://edamontology.org/format_2211": "CIP strain data format",
+ "http://edamontology.org/format_2243": "phylip property values",
+ "http://edamontology.org/format_2303": "STRING entry format (HTML)",
+ "http://edamontology.org/format_2304": "STRING entry format (XML)",
+ "http://edamontology.org/format_2305": "GFF",
+ "http://edamontology.org/format_2306": "GTF",
+ "http://edamontology.org/format_2310": "FASTA-HTML",
+ "http://edamontology.org/format_2311": "EMBL-HTML",
+ "http://edamontology.org/format_2322": "BioCyc enzyme report format",
+ "http://edamontology.org/format_2323": "ENZYME enzyme report format",
+ "http://edamontology.org/format_2328": "PseudoCAP gene report format",
+ "http://edamontology.org/format_2329": "GeneCards gene report format",
+ "http://edamontology.org/format_2330": "Textual format",
+ "http://edamontology.org/format_2331": "HTML",
+ "http://edamontology.org/format_2332": "XML",
+ "http://edamontology.org/format_2333": "Binary format",
+ "http://edamontology.org/format_2334": "URI format",
+ "http://edamontology.org/format_2341": "NCI-Nature pathway entry format",
+ "http://edamontology.org/format_2350": "Format (by type of data)",
+ "http://edamontology.org/format_2352": "BioXSD (XML)",
+ "http://edamontology.org/format_2376": "RDF format",
+ "http://edamontology.org/format_2532": "GenBank-HTML",
+ "http://edamontology.org/format_2542": "Protein features (domains) format",
+ "http://edamontology.org/format_2543": "EMBL-like format",
+ "http://edamontology.org/format_2545": "FASTQ-like format",
+ "http://edamontology.org/format_2546": "FASTA-like",
+ "http://edamontology.org/format_2547": "uniprotkb-like format",
+ "http://edamontology.org/format_2548": "Sequence feature table format",
+ "http://edamontology.org/format_2549": "OBO",
+ "http://edamontology.org/format_2550": "OBO-XML",
+ "http://edamontology.org/format_2551": "Sequence record format (text)",
+ "http://edamontology.org/format_2552": "Sequence record format (XML)",
+ "http://edamontology.org/format_2553": "Sequence feature table format (XML)",
+ "http://edamontology.org/format_2554": "Alignment format (text)",
+ "http://edamontology.org/format_2555": "Alignment format (XML)",
+ "http://edamontology.org/format_2556": "Phylogenetic tree format (text)",
+ "http://edamontology.org/format_2557": "Phylogenetic tree format (XML)",
+ "http://edamontology.org/format_2558": "EMBL-like (XML)",
+ "http://edamontology.org/format_2559": "GenBank-like format",
+ "http://edamontology.org/format_2560": "STRING entry format",
+ "http://edamontology.org/format_2561": "Sequence assembly format (text)",
+ "http://edamontology.org/format_2562": "Amino acid identifier format",
+ "http://edamontology.org/format_2566": "completely unambiguous",
+ "http://edamontology.org/format_2567": "completely unambiguous pure",
+ "http://edamontology.org/format_2568": "completely unambiguous pure nucleotide",
+ "http://edamontology.org/format_2569": "completely unambiguous pure dna",
+ "http://edamontology.org/format_2570": "completely unambiguous pure rna sequence",
+ "http://edamontology.org/format_2571": "Raw sequence format",
+ "http://edamontology.org/format_2572": "BAM",
+ "http://edamontology.org/format_2573": "SAM",
+ "http://edamontology.org/format_2585": "SBML",
+ "http://edamontology.org/format_2607": "completely unambiguous pure protein",
+ "http://edamontology.org/format_2848": "Bibliographic reference format",
+ "http://edamontology.org/format_2919": "Sequence annotation track format",
+ "http://edamontology.org/format_2920": "Alignment format (pair only)",
+ "http://edamontology.org/format_2921": "Sequence variation annotation format",
+ "http://edamontology.org/format_2922": "markx0 variant",
+ "http://edamontology.org/format_2923": "mega variant",
+ "http://edamontology.org/format_2924": "Phylip format variant",
+ "http://edamontology.org/format_3000": "AB1",
+ "http://edamontology.org/format_3001": "ACE",
+ "http://edamontology.org/format_3003": "BED",
+ "http://edamontology.org/format_3004": "bigBed",
+ "http://edamontology.org/format_3005": "WIG",
+ "http://edamontology.org/format_3006": "bigWig",
+ "http://edamontology.org/format_3007": "PSL",
+ "http://edamontology.org/format_3008": "MAF",
+ "http://edamontology.org/format_3009": "2bit",
+ "http://edamontology.org/format_3010": ".nib",
+ "http://edamontology.org/format_3011": "genePred",
+ "http://edamontology.org/format_3012": "pgSnp",
+ "http://edamontology.org/format_3013": "axt",
+ "http://edamontology.org/format_3014": "LAV",
+ "http://edamontology.org/format_3015": "Pileup",
+ "http://edamontology.org/format_3016": "VCF",
+ "http://edamontology.org/format_3017": "SRF",
+ "http://edamontology.org/format_3018": "ZTR",
+ "http://edamontology.org/format_3019": "GVF",
+ "http://edamontology.org/format_3020": "BCF",
+ "http://edamontology.org/format_3033": "Matrix format",
+ "http://edamontology.org/format_3097": "Protein domain classification format",
+ "http://edamontology.org/format_3098": "Raw SCOP domain classification format",
+ "http://edamontology.org/format_3099": "Raw CATH domain classification format",
+ "http://edamontology.org/format_3100": "CATH domain report format",
+ "http://edamontology.org/format_3155": "SBRML",
+ "http://edamontology.org/format_3156": "BioPAX",
+ "http://edamontology.org/format_3157": "EBI Application Result XML",
+ "http://edamontology.org/format_3158": "PSI MI XML (MIF)",
+ "http://edamontology.org/format_3159": "phyloXML",
+ "http://edamontology.org/format_3160": "NeXML",
+ "http://edamontology.org/format_3161": "MAGE-ML",
+ "http://edamontology.org/format_3162": "MAGE-TAB",
+ "http://edamontology.org/format_3163": "GCDML",
+ "http://edamontology.org/format_3164": "GTrack",
+ "http://edamontology.org/format_3166": "Biological pathway or network report format",
+ "http://edamontology.org/format_3167": "Experiment annotation format",
+ "http://edamontology.org/format_3235": "Cytoband format",
+ "http://edamontology.org/format_3239": "CopasiML",
+ "http://edamontology.org/format_3240": "CellML",
+ "http://edamontology.org/format_3242": "PSI MI TAB (MITAB)",
+ "http://edamontology.org/format_3243": "PSI-PAR",
+ "http://edamontology.org/format_3244": "mzML",
+ "http://edamontology.org/format_3245": "Mass spectrometry data format",
+ "http://edamontology.org/format_3246": "TraML",
+ "http://edamontology.org/format_3247": "mzIdentML",
+ "http://edamontology.org/format_3248": "mzQuantML",
+ "http://edamontology.org/format_3249": "GelML",
+ "http://edamontology.org/format_3250": "spML",
+ "http://edamontology.org/format_3252": "OWL Functional Syntax",
+ "http://edamontology.org/format_3253": "Manchester OWL Syntax",
+ "http://edamontology.org/format_3254": "KRSS2 Syntax",
+ "http://edamontology.org/format_3255": "Turtle",
+ "http://edamontology.org/format_3256": "N-Triples",
+ "http://edamontology.org/format_3257": "Notation3",
+ "http://edamontology.org/format_3261": "RDF/XML",
+ "http://edamontology.org/format_3262": "OWL/XML",
+ "http://edamontology.org/format_3281": "A2M",
+ "http://edamontology.org/format_3284": "SFF",
+ "http://edamontology.org/format_3285": "MAP",
+ "http://edamontology.org/format_3286": "PED",
+ "http://edamontology.org/format_3287": "Individual genetic data format",
+ "http://edamontology.org/format_3288": "PED/MAP",
+ "http://edamontology.org/format_3309": "CT",
+ "http://edamontology.org/format_3310": "SS",
+ "http://edamontology.org/format_3311": "RNAML",
+ "http://edamontology.org/format_3312": "GDE",
+ "http://edamontology.org/format_3313": "BLC",
+ "http://edamontology.org/format_3326": "Data index format",
+ "http://edamontology.org/format_3327": "BAI",
+ "http://edamontology.org/format_3328": "HMMER2",
+ "http://edamontology.org/format_3329": "HMMER3",
+ "http://edamontology.org/format_3330": "PO",
+ "http://edamontology.org/format_3331": "BLAST XML results format",
+ "http://edamontology.org/format_3462": "CRAM",
+ "http://edamontology.org/format_3464": "JSON",
+ "http://edamontology.org/format_3466": "EPS",
+ "http://edamontology.org/format_3467": "GIF",
+ "http://edamontology.org/format_3468": "xls",
+ "http://edamontology.org/format_3475": "TSV",
+ "http://edamontology.org/format_3476": "Gene expression data format",
+ "http://edamontology.org/format_3477": "Cytoscape input file format",
+ "http://edamontology.org/format_3484": "ebwt",
+ "http://edamontology.org/format_3485": "RSF",
+ "http://edamontology.org/format_3486": "GCG format variant",
+ "http://edamontology.org/format_3487": "BSML",
+ "http://edamontology.org/format_3491": "ebwtl",
+ "http://edamontology.org/format_3499": "Ensembl variation file format",
+ "http://edamontology.org/format_3506": "docx",
+ "http://edamontology.org/format_3507": "Document format",
+ "http://edamontology.org/format_3508": "PDF",
+ "http://edamontology.org/format_3547": "Image format",
+ "http://edamontology.org/format_3548": "DICOM format",
+ "http://edamontology.org/format_3549": "nii",
+ "http://edamontology.org/format_3550": "mhd",
+ "http://edamontology.org/format_3551": "nrrd",
+ "http://edamontology.org/format_3554": "R file format",
+ "http://edamontology.org/format_3555": "SPSS",
+ "http://edamontology.org/format_3556": "MHTML",
+ "http://edamontology.org/format_3578": "IDAT",
+ "http://edamontology.org/format_3579": "JPG",
+ "http://edamontology.org/format_3580": "rcc",
+ "http://edamontology.org/format_3581": "arff",
+ "http://edamontology.org/format_3582": "afg",
+ "http://edamontology.org/format_3583": "bedgraph",
+ "http://edamontology.org/format_3584": "bedstrict",
+ "http://edamontology.org/format_3585": "bed6",
+ "http://edamontology.org/format_3586": "bed12",
+ "http://edamontology.org/format_3587": "chrominfo",
+ "http://edamontology.org/format_3588": "customtrack",
+ "http://edamontology.org/format_3589": "csfasta",
+ "http://edamontology.org/format_3590": "HDF5",
+ "http://edamontology.org/format_3591": "TIFF",
+ "http://edamontology.org/format_3592": "BMP",
+ "http://edamontology.org/format_3593": "im",
+ "http://edamontology.org/format_3594": "pcd",
+ "http://edamontology.org/format_3595": "pcx",
+ "http://edamontology.org/format_3596": "ppm",
+ "http://edamontology.org/format_3597": "psd",
+ "http://edamontology.org/format_3598": "xbm",
+ "http://edamontology.org/format_3599": "xpm",
+ "http://edamontology.org/format_3600": "rgb",
+ "http://edamontology.org/format_3601": "pbm",
+ "http://edamontology.org/format_3602": "pgm",
+ "http://edamontology.org/format_3603": "PNG",
+ "http://edamontology.org/format_3604": "SVG",
+ "http://edamontology.org/format_3605": "rast",
+ "http://edamontology.org/format_3606": "Sequence quality report format (text)",
+ "http://edamontology.org/format_3607": "qual",
+ "http://edamontology.org/format_3608": "qualsolexa",
+ "http://edamontology.org/format_3609": "qualillumina",
+ "http://edamontology.org/format_3610": "qualsolid",
+ "http://edamontology.org/format_3611": "qual454",
+ "http://edamontology.org/format_3612": "ENCODE peak format",
+ "http://edamontology.org/format_3613": "ENCODE narrow peak format",
+ "http://edamontology.org/format_3614": "ENCODE broad peak format",
+ "http://edamontology.org/format_3615": "bgzip",
+ "http://edamontology.org/format_3616": "tabix",
+ "http://edamontology.org/format_3617": "Graph format",
+ "http://edamontology.org/format_3618": "xgmml",
+ "http://edamontology.org/format_3619": "sif",
+ "http://edamontology.org/format_3620": "xlsx",
+ "http://edamontology.org/format_3621": "SQLite format",
+ "http://edamontology.org/format_3622": "Gemini SQLite format",
+ "http://edamontology.org/format_3623": "Index format",
+ "http://edamontology.org/format_3624": "snpeffdb",
+ "http://edamontology.org/format_3626": "MAT",
+ "http://edamontology.org/format_3650": "netCDF",
+ "http://edamontology.org/format_3651": "MGF",
+ "http://edamontology.org/format_3652": "dta",
+ "http://edamontology.org/format_3653": "pkl",
+ "http://edamontology.org/format_3654": "mzXML",
+ "http://edamontology.org/format_3655": "pepXML",
+ "http://edamontology.org/format_3657": "GPML",
+ "http://edamontology.org/format_3665": "K-mer countgraph",
+ "http://edamontology.org/format_3681": "mzTab",
+ "http://edamontology.org/format_3682": "imzML metadata file",
+ "http://edamontology.org/format_3683": "qcML",
+ "http://edamontology.org/format_3684": "PRIDE XML",
+ "http://edamontology.org/format_3685": "SED-ML",
+ "http://edamontology.org/format_3686": "COMBINE OMEX",
+ "http://edamontology.org/format_3687": "ISA-TAB",
+ "http://edamontology.org/format_3688": "SBtab",
+ "http://edamontology.org/format_3689": "BCML",
+ "http://edamontology.org/format_3690": "BDML",
+ "http://edamontology.org/format_3691": "BEL",
+ "http://edamontology.org/format_3692": "SBGN-ML",
+ "http://edamontology.org/format_3693": "AGP",
+ "http://edamontology.org/format_3696": "PS",
+ "http://edamontology.org/format_3698": "SRA format",
+ "http://edamontology.org/format_3699": "VDB",
+ "http://edamontology.org/format_3700": "Tabix index file format",
+ "http://edamontology.org/format_3701": "Sequin format",
+ "http://edamontology.org/format_3702": "MSF",
+ "http://edamontology.org/format_3706": "Biodiversity data format",
+ "http://edamontology.org/format_3708": "ABCD format",
+ "http://edamontology.org/format_3709": "GCT/Res format",
+ "http://edamontology.org/format_3710": "WIFF format",
+ "http://edamontology.org/format_3711": "X!Tandem XML",
+ "http://edamontology.org/format_3712": "Thermo RAW",
+ "http://edamontology.org/format_3713": "Mascot .dat file",
+ "http://edamontology.org/format_3714": "MaxQuant APL peaklist format",
+ "http://edamontology.org/format_3725": "SBOL",
+ "http://edamontology.org/format_3726": "PMML",
+ "http://edamontology.org/format_3727": "OME-TIFF",
+ "http://edamontology.org/format_3728": "LocARNA PP",
+ "http://edamontology.org/format_3729": "dbGaP format",
+ "http://edamontology.org/format_3746": "BIOM format",
+ "http://edamontology.org/format_3747": "protXML",
+ "http://edamontology.org/format_3748": "Linked data format",
+ "http://edamontology.org/format_3749": "JSON-LD",
+ "http://edamontology.org/format_3750": "YAML",
+ "http://edamontology.org/format_3751": "DSV",
+ "http://edamontology.org/format_3752": "CSV",
+ "http://edamontology.org/format_3758": "SEQUEST .out file",
+ "http://edamontology.org/format_3764": "idXML",
+ "http://edamontology.org/format_3765": "KNIME datatable format",
+ "http://edamontology.org/format_3770": "UniProtKB XML",
+ "http://edamontology.org/format_3771": "UniProtKB RDF",
+ "http://edamontology.org/format_3772": "BioJSON (BioXSD)",
+ "http://edamontology.org/format_3773": "BioYAML",
+ "http://edamontology.org/format_3774": "BioJSON (Jalview)",
+ "http://edamontology.org/format_3775": "GSuite",
+ "http://edamontology.org/format_3776": "BTrack",
+ "http://edamontology.org/format_3777": "MCPD",
+ "http://edamontology.org/format_3780": "Annotated text format",
+ "http://edamontology.org/format_3781": "PubAnnotation format",
+ "http://edamontology.org/format_3782": "BioC",
+ "http://edamontology.org/format_3783": "PubTator format",
+ "http://edamontology.org/format_3784": "Open Annotation format",
+ "http://edamontology.org/format_3785": "BioNLP Shared Task format",
+ "http://edamontology.org/format_3787": "Query language",
+ "http://edamontology.org/format_3788": "SQL",
+ "http://edamontology.org/format_3789": "XQuery",
+ "http://edamontology.org/format_3790": "SPARQL",
+ "http://edamontology.org/format_3804": "xsd",
+ "http://edamontology.org/format_3811": "XMFA",
+ "http://edamontology.org/format_3812": "GEN",
+ "http://edamontology.org/format_3813": "SAMPLE file format",
+ "http://edamontology.org/format_3814": "SDF",
+ "http://edamontology.org/format_3815": "Molfile",
+ "http://edamontology.org/format_3816": "Mol2",
+ "http://edamontology.org/format_3817": "latex",
+ "http://edamontology.org/format_3818": "ELAND format",
+ "http://edamontology.org/format_3819": "Relaxed PHYLIP Interleaved",
+ "http://edamontology.org/format_3820": "Relaxed PHYLIP Sequential",
+ "http://edamontology.org/format_3821": "VisML",
+ "http://edamontology.org/format_3822": "GML",
+ "http://edamontology.org/format_3823": "FASTG",
+ "http://edamontology.org/format_3824": "NMR data format",
+ "http://edamontology.org/format_3825": "nmrML",
+ "http://edamontology.org/format_3826": "proBAM",
+ "http://edamontology.org/format_3827": "proBED",
+ "http://edamontology.org/format_3828": "Raw microarray data format",
+ "http://edamontology.org/format_3829": "GPR",
+ "http://edamontology.org/format_3830": "ARB",
+ "http://edamontology.org/format_3832": "consensusXML",
+ "http://edamontology.org/format_3833": "featureXML",
+ "http://edamontology.org/format_3834": "mzData",
+ "http://edamontology.org/format_3835": "TIDE TXT",
+ "http://edamontology.org/format_3836": "BLAST XML v2 results format",
+ "http://edamontology.org/format_3838": "pptx",
+ "http://edamontology.org/format_3839": "ibd",
+ "http://edamontology.org/format_3841": "NLP format",
+ "http://edamontology.org/format_3843": "BEAST",
+ "http://edamontology.org/format_3844": "Chado-XML",
+ "http://edamontology.org/format_3845": "HSAML",
+ "http://edamontology.org/format_3846": "InterProScan XML",
+ "http://edamontology.org/format_3847": "KGML",
+ "http://edamontology.org/format_3848": "PubMed XML",
+ "http://edamontology.org/format_3849": "MSAML",
+ "http://edamontology.org/format_3850": "OrthoXML",
+ "http://edamontology.org/format_3851": "PSDML",
+ "http://edamontology.org/format_3852": "SeqXML",
+ "http://edamontology.org/format_3853": "UniParc XML",
+ "http://edamontology.org/format_3854": "UniRef XML",
+ "http://edamontology.org/format_3857": "CWL",
+ "http://edamontology.org/format_3858": "Waters RAW",
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+ "http://edamontology.org/operation_0497": "Constrained sequence alignment",
+ "http://edamontology.org/operation_0498": "Consensus-based sequence alignment",
+ "http://edamontology.org/operation_0499": "Tree-based sequence alignment",
+ "http://edamontology.org/operation_0500": "Secondary structure alignment generation",
+ "http://edamontology.org/operation_0501": "Protein secondary structure alignment generation",
+ "http://edamontology.org/operation_0502": "RNA secondary structure alignment",
+ "http://edamontology.org/operation_0503": "Pairwise structure alignment",
+ "http://edamontology.org/operation_0504": "Multiple structure alignment",
+ "http://edamontology.org/operation_0505": "Structure alignment (protein)",
+ "http://edamontology.org/operation_0506": "Structure alignment (RNA)",
+ "http://edamontology.org/operation_0507": "Pairwise structure alignment generation (local)",
+ "http://edamontology.org/operation_0508": "Pairwise structure alignment generation (global)",
+ "http://edamontology.org/operation_0509": "Local structure alignment",
+ "http://edamontology.org/operation_0510": "Global structure alignment",
+ "http://edamontology.org/operation_0511": "Profile-profile alignment (pairwise)",
+ "http://edamontology.org/operation_0512": "Sequence alignment generation (multiple profile)",
+ "http://edamontology.org/operation_0513": "3D profile-to-3D profile alignment (pairwise)",
+ "http://edamontology.org/operation_0514": "Structural profile alignment generation (multiple)",
+ "http://edamontology.org/operation_0515": "Data retrieval (tool metadata)",
+ "http://edamontology.org/operation_0516": "Data retrieval (database metadata)",
+ "http://edamontology.org/operation_0517": "PCR primer design (for large scale sequencing)",
+ "http://edamontology.org/operation_0518": "PCR primer design (for genotyping polymorphisms)",
+ "http://edamontology.org/operation_0519": "PCR primer design (for gene transcription profiling)",
+ "http://edamontology.org/operation_0520": "PCR primer design (for conserved primers)",
+ "http://edamontology.org/operation_0521": "PCR primer design (based on gene structure)",
+ "http://edamontology.org/operation_0522": "PCR primer design (for methylation PCRs)",
+ "http://edamontology.org/operation_0523": "Mapping assembly",
+ "http://edamontology.org/operation_0524": "De-novo assembly",
+ "http://edamontology.org/operation_0525": "Genome assembly",
+ "http://edamontology.org/operation_0526": "EST assembly",
+ "http://edamontology.org/operation_0527": "Sequence tag mapping",
+ "http://edamontology.org/operation_0528": "SAGE data processing",
+ "http://edamontology.org/operation_0529": "MPSS data processing",
+ "http://edamontology.org/operation_0530": "SBS data processing",
+ "http://edamontology.org/operation_0531": "Heat map generation",
+ "http://edamontology.org/operation_0532": "Gene expression profile analysis",
+ "http://edamontology.org/operation_0533": "Expression profile pathway mapping",
+ "http://edamontology.org/operation_0534": "Protein secondary structure assignment (from coordinate data)",
+ "http://edamontology.org/operation_0535": "Protein secondary structure assignment (from CD data)",
+ "http://edamontology.org/operation_0536": "Protein structure assignment (from X-ray crystallographic data)",
+ "http://edamontology.org/operation_0537": "Protein structure assignment (from NMR data)",
+ "http://edamontology.org/operation_0538": "Phylogenetic inference (data centric)",
+ "http://edamontology.org/operation_0539": "Phylogenetic inference (method centric)",
+ "http://edamontology.org/operation_0540": "Phylogenetic inference (from molecular sequences)",
+ "http://edamontology.org/operation_0541": "Phylogenetic inference (from continuous quantitative characters)",
+ "http://edamontology.org/operation_0542": "Phylogenetic inference (from gene frequencies)",
+ "http://edamontology.org/operation_0543": "Phylogenetic inference (from polymorphism data)",
+ "http://edamontology.org/operation_0544": "Species tree construction",
+ "http://edamontology.org/operation_0545": "Phylogenetic inference (parsimony methods)",
+ "http://edamontology.org/operation_0546": "Phylogenetic inference (minimum distance methods)",
+ "http://edamontology.org/operation_0547": "Phylogenetic inference (maximum likelihood and Bayesian methods)",
+ "http://edamontology.org/operation_0548": "Phylogenetic inference (quartet methods)",
+ "http://edamontology.org/operation_0549": "Phylogenetic inference (AI methods)",
+ "http://edamontology.org/operation_0550": "DNA substitution modelling",
+ "http://edamontology.org/operation_0551": "Phylogenetic tree topology analysis",
+ "http://edamontology.org/operation_0552": "Phylogenetic tree bootstrapping",
+ "http://edamontology.org/operation_0553": "Gene tree construction",
+ "http://edamontology.org/operation_0554": "Allele frequency distribution analysis",
+ "http://edamontology.org/operation_0555": "Consensus tree construction",
+ "http://edamontology.org/operation_0556": "Phylogenetic sub/super tree construction",
+ "http://edamontology.org/operation_0557": "Phylogenetic tree distances calculation",
+ "http://edamontology.org/operation_0558": "Phylogenetic tree annotation",
+ "http://edamontology.org/operation_0559": "Immunogenicity prediction",
+ "http://edamontology.org/operation_0560": "DNA vaccine design",
+ "http://edamontology.org/operation_0561": "Sequence formatting",
+ "http://edamontology.org/operation_0562": "Sequence alignment formatting",
+ "http://edamontology.org/operation_0563": "Codon usage table formatting",
+ "http://edamontology.org/operation_0564": "Sequence visualisation",
+ "http://edamontology.org/operation_0565": "Sequence alignment visualisation",
+ "http://edamontology.org/operation_0566": "Sequence cluster visualisation",
+ "http://edamontology.org/operation_0567": "Phylogenetic tree visualisation",
+ "http://edamontology.org/operation_0568": "RNA secondary structure visualisation",
+ "http://edamontology.org/operation_0569": "Protein secondary structure visualisation",
+ "http://edamontology.org/operation_0570": "Structure visualisation",
+ "http://edamontology.org/operation_0571": "Expression data visualisation",
+ "http://edamontology.org/operation_0572": "Protein interaction network visualisation",
+ "http://edamontology.org/operation_0573": "Map drawing",
+ "http://edamontology.org/operation_0574": "Sequence motif rendering",
+ "http://edamontology.org/operation_0575": "Restriction map drawing",
+ "http://edamontology.org/operation_0577": "DNA linear map rendering",
+ "http://edamontology.org/operation_0578": "Plasmid map drawing",
+ "http://edamontology.org/operation_0579": "Operon drawing",
+ "http://edamontology.org/operation_1768": "Nucleic acid folding family identification",
+ "http://edamontology.org/operation_1769": "Nucleic acid folding energy calculation",
+ "http://edamontology.org/operation_1774": "Annotation retrieval",
+ "http://edamontology.org/operation_1777": "Protein function prediction",
+ "http://edamontology.org/operation_1778": "Protein function comparison",
+ "http://edamontology.org/operation_1780": "Sequence submission",
+ "http://edamontology.org/operation_1781": "Gene regulatory network analysis",
+ "http://edamontology.org/operation_1812": "Parsing",
+ "http://edamontology.org/operation_1813": "Sequence retrieval",
+ "http://edamontology.org/operation_1814": "Structure retrieval",
+ "http://edamontology.org/operation_1816": "Surface rendering",
+ "http://edamontology.org/operation_1817": "Protein atom surface calculation (accessible)",
+ "http://edamontology.org/operation_1818": "Protein atom surface calculation (accessible molecular)",
+ "http://edamontology.org/operation_1819": "Protein residue surface calculation (accessible)",
+ "http://edamontology.org/operation_1820": "Protein residue surface calculation (vacuum accessible)",
+ "http://edamontology.org/operation_1821": "Protein residue surface calculation (accessible molecular)",
+ "http://edamontology.org/operation_1822": "Protein residue surface calculation (vacuum molecular)",
+ "http://edamontology.org/operation_1823": "Protein surface calculation (accessible molecular)",
+ "http://edamontology.org/operation_1824": "Protein surface calculation (accessible)",
+ "http://edamontology.org/operation_1825": "Backbone torsion angle calculation",
+ "http://edamontology.org/operation_1826": "Full torsion angle calculation",
+ "http://edamontology.org/operation_1827": "Cysteine torsion angle calculation",
+ "http://edamontology.org/operation_1828": "Tau angle calculation",
+ "http://edamontology.org/operation_1829": "Cysteine bridge detection",
+ "http://edamontology.org/operation_1830": "Free cysteine detection",
+ "http://edamontology.org/operation_1831": "Metal-bound cysteine detection",
+ "http://edamontology.org/operation_1832": "Residue contact calculation (residue-nucleic acid)",
+ "http://edamontology.org/operation_1834": "Protein-metal contact calculation",
+ "http://edamontology.org/operation_1835": "Residue contact calculation (residue-negative ion)",
+ "http://edamontology.org/operation_1836": "Residue bump detection",
+ "http://edamontology.org/operation_1837": "Residue symmetry contact calculation",
+ "http://edamontology.org/operation_1838": "Residue contact calculation (residue-ligand)",
+ "http://edamontology.org/operation_1839": "Salt bridge calculation",
+ "http://edamontology.org/operation_1841": "Rotamer likelihood prediction",
+ "http://edamontology.org/operation_1842": "Proline mutation value calculation",
+ "http://edamontology.org/operation_1843": "Residue packing validation",
+ "http://edamontology.org/operation_1844": "Protein geometry validation",
+ "http://edamontology.org/operation_1845": "PDB file sequence retrieval",
+ "http://edamontology.org/operation_1846": "HET group detection",
+ "http://edamontology.org/operation_1847": "DSSP secondary structure assignment",
+ "http://edamontology.org/operation_1848": "Structure formatting",
+ "http://edamontology.org/operation_1850": "Protein cysteine and disulfide bond assignment",
+ "http://edamontology.org/operation_1913": "Residue validation",
+ "http://edamontology.org/operation_1914": "Structure retrieval (water)",
+ "http://edamontology.org/operation_2008": "siRNA duplex prediction",
+ "http://edamontology.org/operation_2089": "Sequence alignment refinement",
+ "http://edamontology.org/operation_2120": "Listfile processing",
+ "http://edamontology.org/operation_2121": "Sequence file editing",
+ "http://edamontology.org/operation_2122": "Sequence alignment file processing",
+ "http://edamontology.org/operation_2123": "Small molecule data processing",
+ "http://edamontology.org/operation_2222": "Data retrieval (ontology annotation)",
+ "http://edamontology.org/operation_2224": "Data retrieval (ontology concept)",
+ "http://edamontology.org/operation_2233": "Representative sequence identification",
+ "http://edamontology.org/operation_2234": "Structure file processing",
+ "http://edamontology.org/operation_2237": "Data retrieval (sequence profile)",
+ "http://edamontology.org/operation_2238": "Statistical calculation",
+ "http://edamontology.org/operation_2239": "3D-1D scoring matrix generation",
+ "http://edamontology.org/operation_2241": "Transmembrane protein visualisation",
+ "http://edamontology.org/operation_2246": "Demonstration",
+ "http://edamontology.org/operation_2264": "Data retrieval (pathway or network)",
+ "http://edamontology.org/operation_2265": "Data retrieval (identifier)",
+ "http://edamontology.org/operation_2284": "Nucleic acid density plotting",
+ "http://edamontology.org/operation_2403": "Sequence analysis",
+ "http://edamontology.org/operation_2404": "Sequence motif analysis",
+ "http://edamontology.org/operation_2405": "Protein interaction data processing",
+ "http://edamontology.org/operation_2406": "Protein structure analysis",
+ "http://edamontology.org/operation_2407": "Annotation processing",
+ "http://edamontology.org/operation_2408": "Sequence feature analysis",
+ "http://edamontology.org/operation_2409": "Data handling",
+ "http://edamontology.org/operation_2410": "Gene expression analysis",
+ "http://edamontology.org/operation_2411": "Structural profile processing",
+ "http://edamontology.org/operation_2412": "Data index processing",
+ "http://edamontology.org/operation_2413": "Sequence profile processing",
+ "http://edamontology.org/operation_2414": "Protein function analysis",
+ "http://edamontology.org/operation_2415": "Protein folding analysis",
+ "http://edamontology.org/operation_2416": "Protein secondary structure analysis",
+ "http://edamontology.org/operation_2417": "Physicochemical property data processing",
+ "http://edamontology.org/operation_2419": "Primer and probe design",
+ "http://edamontology.org/operation_2420": "Operation (typed)",
+ "http://edamontology.org/operation_2421": "Database search",
+ "http://edamontology.org/operation_2422": "Data retrieval",
+ "http://edamontology.org/operation_2423": "Prediction and recognition",
+ "http://edamontology.org/operation_2424": "Comparison",
+ "http://edamontology.org/operation_2425": "Optimisation and refinement",
+ "http://edamontology.org/operation_2426": "Modelling and simulation",
+ "http://edamontology.org/operation_2427": "Data handling",
+ "http://edamontology.org/operation_2428": "Validation",
+ "http://edamontology.org/operation_2429": "Mapping",
+ "http://edamontology.org/operation_2430": "Design",
+ "http://edamontology.org/operation_2432": "Microarray data processing",
+ "http://edamontology.org/operation_2433": "Codon usage table processing",
+ "http://edamontology.org/operation_2434": "Data retrieval (codon usage table)",
+ "http://edamontology.org/operation_2435": "Gene expression profile processing",
+ "http://edamontology.org/operation_2436": "Gene-set enrichment analysis",
+ "http://edamontology.org/operation_2437": "Gene regulatory network prediction",
+ "http://edamontology.org/operation_2438": "Pathway or network processing",
+ "http://edamontology.org/operation_2439": "RNA secondary structure analysis",
+ "http://edamontology.org/operation_2440": "Structure processing (RNA)",
+ "http://edamontology.org/operation_2441": "RNA structure prediction",
+ "http://edamontology.org/operation_2442": "DNA structure prediction",
+ "http://edamontology.org/operation_2443": "Phylogenetic tree processing",
+ "http://edamontology.org/operation_2444": "Protein secondary structure processing",
+ "http://edamontology.org/operation_2445": "Protein interaction network processing",
+ "http://edamontology.org/operation_2446": "Sequence processing",
+ "http://edamontology.org/operation_2447": "Sequence processing (protein)",
+ "http://edamontology.org/operation_2448": "Sequence processing (nucleic acid)",
+ "http://edamontology.org/operation_2451": "Sequence comparison",
+ "http://edamontology.org/operation_2452": "Sequence cluster processing",
+ "http://edamontology.org/operation_2453": "Feature table processing",
+ "http://edamontology.org/operation_2454": "Gene prediction",
+ "http://edamontology.org/operation_2456": "GPCR classification",
+ "http://edamontology.org/operation_2457": "GPCR coupling selectivity prediction",
+ "http://edamontology.org/operation_2459": "Structure processing (protein)",
+ "http://edamontology.org/operation_2460": "Protein atom surface calculation",
+ "http://edamontology.org/operation_2461": "Protein residue surface calculation",
+ "http://edamontology.org/operation_2462": "Protein surface calculation",
+ "http://edamontology.org/operation_2463": "Sequence alignment processing",
+ "http://edamontology.org/operation_2464": "Protein-protein binding site prediction",
+ "http://edamontology.org/operation_2465": "Structure processing",
+ "http://edamontology.org/operation_2466": "Map annotation",
+ "http://edamontology.org/operation_2467": "Data retrieval (protein annotation)",
+ "http://edamontology.org/operation_2468": "Data retrieval (phylogenetic tree)",
+ "http://edamontology.org/operation_2469": "Data retrieval (protein interaction annotation)",
+ "http://edamontology.org/operation_2470": "Data retrieval (protein family annotation)",
+ "http://edamontology.org/operation_2471": "Data retrieval (RNA family annotation)",
+ "http://edamontology.org/operation_2472": "Data retrieval (gene annotation)",
+ "http://edamontology.org/operation_2473": "Data retrieval (genotype and phenotype annotation)",
+ "http://edamontology.org/operation_2474": "Protein architecture comparison",
+ "http://edamontology.org/operation_2475": "Protein architecture recognition",
+ "http://edamontology.org/operation_2476": "Molecular dynamics",
+ "http://edamontology.org/operation_2478": "Nucleic acid sequence analysis",
+ "http://edamontology.org/operation_2479": "Protein sequence analysis",
+ "http://edamontology.org/operation_2480": "Structure analysis",
+ "http://edamontology.org/operation_2481": "Nucleic acid structure analysis",
+ "http://edamontology.org/operation_2482": "Secondary structure processing",
+ "http://edamontology.org/operation_2483": "Structure comparison",
+ "http://edamontology.org/operation_2485": "Helical wheel drawing",
+ "http://edamontology.org/operation_2486": "Topology diagram drawing",
+ "http://edamontology.org/operation_2487": "Protein structure comparison",
+ "http://edamontology.org/operation_2488": "Protein secondary structure comparison",
+ "http://edamontology.org/operation_2489": "Subcellular localisation prediction",
+ "http://edamontology.org/operation_2490": "Residue contact calculation (residue-residue)",
+ "http://edamontology.org/operation_2491": "Hydrogen bond calculation (inter-residue)",
+ "http://edamontology.org/operation_2492": "Protein interaction prediction",
+ "http://edamontology.org/operation_2493": "Codon usage data processing",
+ "http://edamontology.org/operation_2495": "Expression analysis",
+ "http://edamontology.org/operation_2496": "Gene regulatory network processing",
+ "http://edamontology.org/operation_2497": "Pathway or network analysis",
+ "http://edamontology.org/operation_2498": "Sequencing-based expression profile data analysis",
+ "http://edamontology.org/operation_2499": "Splicing analysis",
+ "http://edamontology.org/operation_2500": "Microarray raw data analysis",
+ "http://edamontology.org/operation_2501": "Nucleic acid analysis",
+ "http://edamontology.org/operation_2502": "Protein analysis",
+ "http://edamontology.org/operation_2503": "Sequence data processing",
+ "http://edamontology.org/operation_2504": "Structural data processing",
+ "http://edamontology.org/operation_2505": "Text processing",
+ "http://edamontology.org/operation_2506": "Protein sequence alignment analysis",
+ "http://edamontology.org/operation_2507": "Nucleic acid sequence alignment analysis",
+ "http://edamontology.org/operation_2508": "Nucleic acid sequence comparison",
+ "http://edamontology.org/operation_2509": "Protein sequence comparison",
+ "http://edamontology.org/operation_2510": "DNA back-translation",
+ "http://edamontology.org/operation_2511": "Sequence editing (nucleic acid)",
+ "http://edamontology.org/operation_2512": "Sequence editing (protein)",
+ "http://edamontology.org/operation_2513": "Sequence generation (nucleic acid)",
+ "http://edamontology.org/operation_2514": "Sequence generation (protein)",
+ "http://edamontology.org/operation_2515": "Nucleic acid sequence visualisation",
+ "http://edamontology.org/operation_2516": "Protein sequence visualisation",
+ "http://edamontology.org/operation_2518": "Nucleic acid structure comparison",
+ "http://edamontology.org/operation_2519": "Structure processing (nucleic acid)",
+ "http://edamontology.org/operation_2520": "DNA mapping",
+ "http://edamontology.org/operation_2521": "Map data processing",
+ "http://edamontology.org/operation_2574": "Protein hydropathy calculation",
+ "http://edamontology.org/operation_2575": "Binding site prediction",
+ "http://edamontology.org/operation_2844": "Structure clustering",
+ "http://edamontology.org/operation_2871": "Sequence tagged site (STS) mapping",
+ "http://edamontology.org/operation_2928": "Alignment",
+ "http://edamontology.org/operation_2929": "Protein fragment weight comparison",
+ "http://edamontology.org/operation_2930": "Protein property comparison",
+ "http://edamontology.org/operation_2931": "Secondary structure comparison",
+ "http://edamontology.org/operation_2932": "Hopp and Woods plotting",
+ "http://edamontology.org/operation_2934": "Cluster textual view generation",
+ "http://edamontology.org/operation_2935": "Clustering profile plotting",
+ "http://edamontology.org/operation_2936": "Dendrograph plotting",
+ "http://edamontology.org/operation_2937": "Proximity map plotting",
+ "http://edamontology.org/operation_2938": "Dendrogram visualisation",
+ "http://edamontology.org/operation_2939": "Principal component visualisation",
+ "http://edamontology.org/operation_2940": "Scatter plot plotting",
+ "http://edamontology.org/operation_2941": "Whole microarray graph plotting",
+ "http://edamontology.org/operation_2942": "Treemap visualisation",
+ "http://edamontology.org/operation_2943": "Box-Whisker plot plotting",
+ "http://edamontology.org/operation_2944": "Physical mapping",
+ "http://edamontology.org/operation_2945": "Analysis",
+ "http://edamontology.org/operation_2946": "Alignment analysis",
+ "http://edamontology.org/operation_2947": "Article analysis",
+ "http://edamontology.org/operation_2948": "Molecular interaction analysis",
+ "http://edamontology.org/operation_2949": "Protein-protein interaction analysis",
+ "http://edamontology.org/operation_2950": "Residue distance calculation",
+ "http://edamontology.org/operation_2951": "Alignment processing",
+ "http://edamontology.org/operation_2952": "Structure alignment processing",
+ "http://edamontology.org/operation_2962": "Codon usage bias calculation",
+ "http://edamontology.org/operation_2963": "Codon usage bias plotting",
+ "http://edamontology.org/operation_2964": "Codon usage fraction calculation",
+ "http://edamontology.org/operation_2990": "Classification",
+ "http://edamontology.org/operation_2993": "Molecular interaction data processing",
+ "http://edamontology.org/operation_2995": "Sequence classification",
+ "http://edamontology.org/operation_2996": "Structure classification",
+ "http://edamontology.org/operation_2997": "Protein comparison",
+ "http://edamontology.org/operation_2998": "Nucleic acid comparison",
+ "http://edamontology.org/operation_3023": "Prediction and recognition (protein)",
+ "http://edamontology.org/operation_3024": "Prediction and recognition (nucleic acid)",
+ "http://edamontology.org/operation_3080": "Structure editing",
+ "http://edamontology.org/operation_3081": "Sequence alignment editing",
+ "http://edamontology.org/operation_3083": "Pathway or network visualisation",
+ "http://edamontology.org/operation_3084": "Protein function prediction (from sequence)",
+ "http://edamontology.org/operation_3087": "Protein sequence feature detection",
+ "http://edamontology.org/operation_3088": "Protein property calculation (from sequence)",
+ "http://edamontology.org/operation_3090": "Protein feature prediction (from structure)",
+ "http://edamontology.org/operation_3092": "Protein feature detection",
+ "http://edamontology.org/operation_3093": "Database search (by sequence)",
+ "http://edamontology.org/operation_3094": "Protein interaction network prediction",
+ "http://edamontology.org/operation_3095": "Nucleic acid design",
+ "http://edamontology.org/operation_3096": "Editing",
+ "http://edamontology.org/operation_3180": "Sequence assembly validation",
+ "http://edamontology.org/operation_3182": "Genome alignment",
+ "http://edamontology.org/operation_3183": "Localised reassembly",
+ "http://edamontology.org/operation_3184": "Sequence assembly visualisation",
+ "http://edamontology.org/operation_3185": "Base-calling",
+ "http://edamontology.org/operation_3186": "Bisulfite mapping",
+ "http://edamontology.org/operation_3187": "Sequence contamination filtering",
+ "http://edamontology.org/operation_3189": "Trim ends",
+ "http://edamontology.org/operation_3190": "Trim vector",
+ "http://edamontology.org/operation_3191": "Trim to reference",
+ "http://edamontology.org/operation_3192": "Sequence trimming",
+ "http://edamontology.org/operation_3194": "Genome feature comparison",
+ "http://edamontology.org/operation_3195": "Sequencing error detection",
+ "http://edamontology.org/operation_3196": "Genotyping",
+ "http://edamontology.org/operation_3197": "Genetic variation analysis",
+ "http://edamontology.org/operation_3198": "Read mapping",
+ "http://edamontology.org/operation_3199": "Split read mapping",
+ "http://edamontology.org/operation_3200": "DNA barcoding",
+ "http://edamontology.org/operation_3201": "SNP calling",
+ "http://edamontology.org/operation_3202": "Polymorphism detection",
+ "http://edamontology.org/operation_3203": "Chromatogram visualisation",
+ "http://edamontology.org/operation_3204": "Methylation analysis",
+ "http://edamontology.org/operation_3205": "Methylation calling",
+ "http://edamontology.org/operation_3206": "Whole genome methylation analysis",
+ "http://edamontology.org/operation_3207": "Gene methylation analysis",
+ "http://edamontology.org/operation_3208": "Genome visualisation",
+ "http://edamontology.org/operation_3209": "Genome comparison",
+ "http://edamontology.org/operation_3211": "Genome indexing",
+ "http://edamontology.org/operation_3212": "Genome indexing (Burrows-Wheeler)",
+ "http://edamontology.org/operation_3213": "Genome indexing (suffix arrays)",
+ "http://edamontology.org/operation_3214": "Spectral analysis",
+ "http://edamontology.org/operation_3215": "Peak detection",
+ "http://edamontology.org/operation_3216": "Scaffolding",
+ "http://edamontology.org/operation_3217": "Scaffold gap completion",
+ "http://edamontology.org/operation_3218": "Sequencing quality control",
+ "http://edamontology.org/operation_3219": "Read pre-processing",
+ "http://edamontology.org/operation_3221": "Species frequency estimation",
+ "http://edamontology.org/operation_3222": "Peak calling",
+ "http://edamontology.org/operation_3223": "Differential gene expression profiling",
+ "http://edamontology.org/operation_3224": "Gene set testing",
+ "http://edamontology.org/operation_3225": "Variant classification",
+ "http://edamontology.org/operation_3226": "Variant prioritisation",
+ "http://edamontology.org/operation_3227": "Variant calling",
+ "http://edamontology.org/operation_3228": "Structural variation detection",
+ "http://edamontology.org/operation_3229": "Exome assembly",
+ "http://edamontology.org/operation_3230": "Read depth analysis",
+ "http://edamontology.org/operation_3232": "Gene expression QTL analysis",
+ "http://edamontology.org/operation_3233": "Copy number estimation",
+ "http://edamontology.org/operation_3237": "Primer removal",
+ "http://edamontology.org/operation_3258": "Transcriptome assembly",
+ "http://edamontology.org/operation_3259": "Transcriptome assembly (de novo)",
+ "http://edamontology.org/operation_3260": "Transcriptome assembly (mapping)",
+ "http://edamontology.org/operation_3267": "Sequence coordinate conversion",
+ "http://edamontology.org/operation_3278": "Document similarity calculation",
+ "http://edamontology.org/operation_3279": "Document clustering",
+ "http://edamontology.org/operation_3280": "Named-entity and concept recognition",
+ "http://edamontology.org/operation_3282": "ID mapping",
+ "http://edamontology.org/operation_3283": "Anonymisation",
+ "http://edamontology.org/operation_3289": "ID retrieval",
+ "http://edamontology.org/operation_3348": "Sequence checksum generation",
+ "http://edamontology.org/operation_3349": "Bibliography generation",
+ "http://edamontology.org/operation_3350": "Protein quaternary structure prediction",
+ "http://edamontology.org/operation_3351": "Molecular surface analysis",
+ "http://edamontology.org/operation_3352": "Ontology comparison",
+ "http://edamontology.org/operation_3353": "Ontology comparison",
+ "http://edamontology.org/operation_3357": "Format detection",
+ "http://edamontology.org/operation_3359": "Splitting",
+ "http://edamontology.org/operation_3429": "Generation",
+ "http://edamontology.org/operation_3430": "Nucleic acid sequence feature detection",
+ "http://edamontology.org/operation_3431": "Deposition",
+ "http://edamontology.org/operation_3432": "Clustering",
+ "http://edamontology.org/operation_3433": "Assembly",
+ "http://edamontology.org/operation_3434": "Conversion",
+ "http://edamontology.org/operation_3435": "Standardisation and normalisation",
+ "http://edamontology.org/operation_3436": "Aggregation",
+ "http://edamontology.org/operation_3437": "Article comparison",
+ "http://edamontology.org/operation_3438": "Calculation",
+ "http://edamontology.org/operation_3439": "Pathway or network prediction",
+ "http://edamontology.org/operation_3440": "Genome assembly",
+ "http://edamontology.org/operation_3441": "Plotting",
+ "http://edamontology.org/operation_3443": "Image analysis",
+ "http://edamontology.org/operation_3445": "Diffraction data analysis",
+ "http://edamontology.org/operation_3446": "Cell migration analysis",
+ "http://edamontology.org/operation_3447": "Diffraction data reduction",
+ "http://edamontology.org/operation_3450": "Neurite measurement",
+ "http://edamontology.org/operation_3453": "Diffraction data integration",
+ "http://edamontology.org/operation_3454": "Phasing",
+ "http://edamontology.org/operation_3455": "Molecular replacement",
+ "http://edamontology.org/operation_3456": "Rigid body refinement",
+ "http://edamontology.org/operation_3457": "Single particle analysis",
+ "http://edamontology.org/operation_3458": "Single particle alignment and classification",
+ "http://edamontology.org/operation_3459": "Functional clustering",
+ "http://edamontology.org/operation_3460": "Taxonomic classification",
+ "http://edamontology.org/operation_3461": "Virulence prediction",
+ "http://edamontology.org/operation_3463": "Expression correlation analysis",
+ "http://edamontology.org/operation_3465": "Correlation",
+ "http://edamontology.org/operation_3469": "RNA structure covariance model generation",
+ "http://edamontology.org/operation_3470": "RNA secondary structure prediction (shape-based)",
+ "http://edamontology.org/operation_3471": "Nucleic acid folding prediction (alignment-based)",
+ "http://edamontology.org/operation_3472": "k-mer counting",
+ "http://edamontology.org/operation_3478": "Phylogenetic reconstruction",
+ "http://edamontology.org/operation_3480": "Probabilistic data generation",
+ "http://edamontology.org/operation_3481": "Probabilistic sequence generation",
+ "http://edamontology.org/operation_3482": "Antimicrobial resistance prediction",
+ "http://edamontology.org/operation_3501": "Enrichment analysis",
+ "http://edamontology.org/operation_3502": "Chemical similarity enrichment",
+ "http://edamontology.org/operation_3503": "Incident curve plotting",
+ "http://edamontology.org/operation_3504": "Variant pattern analysis",
+ "http://edamontology.org/operation_3545": "Mathematical modelling",
+ "http://edamontology.org/operation_3552": "Microscope image visualisation",
+ "http://edamontology.org/operation_3553": "Image annotation",
+ "http://edamontology.org/operation_3557": "Imputation",
+ "http://edamontology.org/operation_3559": "Ontology visualisation",
+ "http://edamontology.org/operation_3560": "Maximum occurence analysis",
+ "http://edamontology.org/operation_3561": "Database comparison",
+ "http://edamontology.org/operation_3562": "Network simulation",
+ "http://edamontology.org/operation_3563": "RNA-seq read count analysis",
+ "http://edamontology.org/operation_3564": "Chemical redundancy removal",
+ "http://edamontology.org/operation_3565": "RNA-seq time series data analysis",
+ "http://edamontology.org/operation_3566": "Simulated gene expression data generation",
+ "http://edamontology.org/operation_3625": "Relation extraction",
+ "http://edamontology.org/operation_3627": "Mass spectra calibration",
+ "http://edamontology.org/operation_3628": "Chromatographic alignment",
+ "http://edamontology.org/operation_3629": "Deisotoping",
+ "http://edamontology.org/operation_3630": "Protein quantification",
+ "http://edamontology.org/operation_3631": "Peptide identification",
+ "http://edamontology.org/operation_3632": "Isotopic distributions calculation",
+ "http://edamontology.org/operation_3633": "Retention time prediction",
+ "http://edamontology.org/operation_3634": "Label-free quantification",
+ "http://edamontology.org/operation_3635": "Labeled quantification",
+ "http://edamontology.org/operation_3636": "MRM/SRM",
+ "http://edamontology.org/operation_3637": "Spectral counting",
+ "http://edamontology.org/operation_3638": "SILAC",
+ "http://edamontology.org/operation_3639": "iTRAQ",
+ "http://edamontology.org/operation_3640": "18O labeling",
+ "http://edamontology.org/operation_3641": "TMT-tag",
+ "http://edamontology.org/operation_3642": "Dimethyl",
+ "http://edamontology.org/operation_3643": "Tag-based peptide identification",
+ "http://edamontology.org/operation_3644": "de Novo sequencing",
+ "http://edamontology.org/operation_3645": "PTM identification",
+ "http://edamontology.org/operation_3646": "Peptide database search",
+ "http://edamontology.org/operation_3647": "Blind peptide database search",
+ "http://edamontology.org/operation_3648": "Validation of peptide-spectrum matches",
+ "http://edamontology.org/operation_3649": "Target-Decoy",
+ "http://edamontology.org/operation_3658": "Statistical inference",
+ "http://edamontology.org/operation_3659": "Regression analysis",
+ "http://edamontology.org/operation_3660": "Metabolic network modelling",
+ "http://edamontology.org/operation_3661": "SNP annotation",
+ "http://edamontology.org/operation_3662": "Ab-initio gene prediction",
+ "http://edamontology.org/operation_3663": "Homology-based gene prediction",
+ "http://edamontology.org/operation_3664": "Statistical modelling",
+ "http://edamontology.org/operation_3666": "Molecular surface comparison",
+ "http://edamontology.org/operation_3672": "Gene functional annotation",
+ "http://edamontology.org/operation_3675": "Variant filtering",
+ "http://edamontology.org/operation_3677": "Differential binding analysis",
+ "http://edamontology.org/operation_3680": "RNA-Seq analysis",
+ "http://edamontology.org/operation_3694": "Mass spectrum visualisation",
+ "http://edamontology.org/operation_3695": "Filtering",
+ "http://edamontology.org/operation_3703": "Reference identification",
+ "http://edamontology.org/operation_3704": "Ion counting",
+ "http://edamontology.org/operation_3705": "Isotope-coded protein label",
+ "http://edamontology.org/operation_3715": "Metabolic labeling",
+ "http://edamontology.org/operation_3730": "Cross-assembly",
+ "http://edamontology.org/operation_3731": "Sample comparison",
+ "http://edamontology.org/operation_3741": "Differential protein expression profiling",
+ "http://edamontology.org/operation_3742": "Differential gene expression analysis",
+ "http://edamontology.org/operation_3744": "Multiple sample visualisation",
+ "http://edamontology.org/operation_3745": "Ancestral reconstruction",
+ "http://edamontology.org/operation_3755": "PTM localisation",
+ "http://edamontology.org/operation_3760": "Service management",
+ "http://edamontology.org/operation_3761": "Service discovery",
+ "http://edamontology.org/operation_3762": "Service composition",
+ "http://edamontology.org/operation_3763": "Service invocation",
+ "http://edamontology.org/operation_3766": "Weighted correlation network analysis",
+ "http://edamontology.org/operation_3767": "Protein identification",
+ "http://edamontology.org/operation_3778": "Text annotation",
+ "http://edamontology.org/operation_3791": "Collapsing methods",
+ "http://edamontology.org/operation_3792": "miRNA expression analysis",
+ "http://edamontology.org/operation_3793": "Read summarisation",
+ "http://edamontology.org/operation_3795": "In vitro selection",
+ "http://edamontology.org/operation_3797": "Rarefaction",
+ "http://edamontology.org/operation_3798": "Read binning",
+ "http://edamontology.org/operation_3799": "Quantification",
+ "http://edamontology.org/operation_3800": "RNA-Seq quantification",
+ "http://edamontology.org/operation_3801": "Spectral library search",
+ "http://edamontology.org/operation_3802": "Sorting",
+ "http://edamontology.org/operation_3803": "Natural product identification",
+ "http://edamontology.org/operation_3809": "DMR identification",
+ "http://edamontology.org/operation_3840": "Multilocus sequence typing",
+ "http://edamontology.org/operation_3860": "Spectrum calculation",
+ "http://edamontology.org/operation_3890": "Trajectory visualization",
+ "http://edamontology.org/operation_3891": "Essential dynamics",
+ "http://edamontology.org/operation_3893": "Forcefield parameterisation",
+ "http://edamontology.org/operation_3894": "DNA profiling",
+ "http://edamontology.org/operation_3896": "Active site prediction",
+ "http://edamontology.org/operation_3897": "Ligand-binding site prediction",
+ "http://edamontology.org/operation_3898": "Metal-binding site prediction",
+ "http://edamontology.org/operation_3899": "Protein-protein docking",
+ "http://edamontology.org/operation_3900": "DNA-binding protein prediction",
+ "http://edamontology.org/operation_3901": "RNA-binding protein prediction",
+ "http://edamontology.org/operation_3902": "RNA binding site prediction",
+ "http://edamontology.org/operation_3903": "DNA binding site prediction",
+ "http://edamontology.org/operation_3904": "Protein disorder prediction",
+ "http://edamontology.org/operation_3907": "Information extraction",
+ "http://edamontology.org/operation_3908": "Information retrieval",
+ "http://edamontology.org/operation_3918": "Genome analysis",
+ "http://edamontology.org/operation_3919": "Methylation calling",
+ "http://edamontology.org/operation_3920": "DNA testing",
+ "http://edamontology.org/operation_3921": "Sequence read processing",
+ "http://edamontology.org/operation_3923": "Genome resequencing",
+ "http://edamontology.org/operation_3925": "Network visualisation",
+ "http://edamontology.org/operation_3926": "Pathway visualisation",
+ "http://edamontology.org/operation_3927": "Network analysis",
+ "http://edamontology.org/operation_3928": "Pathway analysis",
+ "http://edamontology.org/operation_3929": "Metabolic pathway prediction",
+ "http://edamontology.org/operation_3931": "Chemometrics",
+ "http://edamontology.org/operation_3933": "Demultiplexing",
+ "http://edamontology.org/operation_3935": "Dimensionality reduction",
+ "http://edamontology.org/operation_3936": "Feature selection",
+ "http://edamontology.org/operation_3937": "Feature extraction",
+ "http://edamontology.org/operation_3938": "Virtual screening",
+ "http://edamontology.org/operation_3939": "Metabolic engineering",
+ "http://edamontology.org/operation_3942": "Tree dating",
+ "http://edamontology.org/operation_3946": "Ecological modelling",
+ "http://edamontology.org/operation_3947": "Phylogenetic tree reconciliation",
+ "http://edamontology.org/operation_3950": "Selection detection",
+ "http://edamontology.org/operation_3960": "Principal component analysis",
+ "http://edamontology.org/operation_3961": "Copy number variation detection",
+ "http://edamontology.org/operation_3962": "Deletion detection",
+ "http://edamontology.org/operation_3963": "Duplication detection",
+ "http://edamontology.org/operation_3964": "Complex CNV detection",
+ "http://edamontology.org/operation_3965": "Amplification detection",
+ "http://edamontology.org/operation_3968": "Adhesin prediction",
+ "http://edamontology.org/operation_4008": "Protein design",
+ "http://edamontology.org/operation_4009": "Small molecule design",
+ "http://edamontology.org/topic_0003": "Topic",
+ "http://edamontology.org/topic_0077": "Nucleic acids",
+ "http://edamontology.org/topic_0078": "Proteins",
+ "http://edamontology.org/topic_0079": "Metabolites",
+ "http://edamontology.org/topic_0080": "Sequence analysis",
+ "http://edamontology.org/topic_0081": "Structure analysis",
+ "http://edamontology.org/topic_0082": "Structure prediction",
+ "http://edamontology.org/topic_0083": "Alignment",
+ "http://edamontology.org/topic_0084": "Phylogeny",
+ "http://edamontology.org/topic_0085": "Functional genomics",
+ "http://edamontology.org/topic_0089": "Ontology and terminology",
+ "http://edamontology.org/topic_0090": "Information retrieval",
+ "http://edamontology.org/topic_0091": "Bioinformatics",
+ "http://edamontology.org/topic_0092": "Data visualisation",
+ "http://edamontology.org/topic_0094": "Nucleic acid thermodynamics",
+ "http://edamontology.org/topic_0097": "Nucleic acid structure analysis",
+ "http://edamontology.org/topic_0099": "RNA",
+ "http://edamontology.org/topic_0100": "Nucleic acid restriction",
+ "http://edamontology.org/topic_0102": "Mapping",
+ "http://edamontology.org/topic_0107": "Genetic codes and codon usage",
+ "http://edamontology.org/topic_0108": "Protein expression",
+ "http://edamontology.org/topic_0109": "Gene finding",
+ "http://edamontology.org/topic_0110": "Transcription",
+ "http://edamontology.org/topic_0111": "Promoters",
+ "http://edamontology.org/topic_0112": "Nucleic acid folding",
+ "http://edamontology.org/topic_0114": "Gene structure",
+ "http://edamontology.org/topic_0121": "Proteomics",
+ "http://edamontology.org/topic_0122": "Structural genomics",
+ "http://edamontology.org/topic_0123": "Protein properties",
+ "http://edamontology.org/topic_0128": "Protein interactions",
+ "http://edamontology.org/topic_0130": "Protein folding, stability and design",
+ "http://edamontology.org/topic_0133": "Two-dimensional gel electrophoresis",
+ "http://edamontology.org/topic_0134": "Mass spectrometry",
+ "http://edamontology.org/topic_0135": "Protein microarrays",
+ "http://edamontology.org/topic_0137": "Protein hydropathy",
+ "http://edamontology.org/topic_0140": "Protein targeting and localisation",
+ "http://edamontology.org/topic_0141": "Protein cleavage sites and proteolysis",
+ "http://edamontology.org/topic_0143": "Protein structure comparison",
+ "http://edamontology.org/topic_0144": "Protein residue interactions",
+ "http://edamontology.org/topic_0147": "Protein-protein interactions",
+ "http://edamontology.org/topic_0148": "Protein-ligand interactions",
+ "http://edamontology.org/topic_0149": "Protein-nucleic acid interactions",
+ "http://edamontology.org/topic_0150": "Protein design",
+ "http://edamontology.org/topic_0151": "G protein-coupled receptors (GPCR)",
+ "http://edamontology.org/topic_0152": "Carbohydrates",
+ "http://edamontology.org/topic_0153": "Lipids",
+ "http://edamontology.org/topic_0154": "Small molecules",
+ "http://edamontology.org/topic_0156": "Sequence editing",
+ "http://edamontology.org/topic_0157": "Sequence composition, complexity and repeats",
+ "http://edamontology.org/topic_0158": "Sequence motifs",
+ "http://edamontology.org/topic_0159": "Sequence comparison",
+ "http://edamontology.org/topic_0160": "Sequence sites, features and motifs",
+ "http://edamontology.org/topic_0163": "Sequence database search",
+ "http://edamontology.org/topic_0164": "Sequence clustering",
+ "http://edamontology.org/topic_0166": "Protein structural motifs and surfaces",
+ "http://edamontology.org/topic_0167": "Structural (3D) profiles",
+ "http://edamontology.org/topic_0172": "Protein structure prediction",
+ "http://edamontology.org/topic_0173": "Nucleic acid structure prediction",
+ "http://edamontology.org/topic_0174": "Ab initio structure prediction",
+ "http://edamontology.org/topic_0175": "Homology modelling",
+ "http://edamontology.org/topic_0176": "Molecular dynamics",
+ "http://edamontology.org/topic_0177": "Molecular docking",
+ "http://edamontology.org/topic_0178": "Protein secondary structure prediction",
+ "http://edamontology.org/topic_0179": "Protein tertiary structure prediction",
+ "http://edamontology.org/topic_0180": "Protein fold recognition",
+ "http://edamontology.org/topic_0182": "Sequence alignment",
+ "http://edamontology.org/topic_0183": "Structure alignment",
+ "http://edamontology.org/topic_0184": "Threading",
+ "http://edamontology.org/topic_0188": "Sequence profiles and HMMs",
+ "http://edamontology.org/topic_0191": "Phylogeny reconstruction",
+ "http://edamontology.org/topic_0194": "Phylogenomics",
+ "http://edamontology.org/topic_0195": "Virtual PCR",
+ "http://edamontology.org/topic_0196": "Sequence assembly",
+ "http://edamontology.org/topic_0199": "Genetic variation",
+ "http://edamontology.org/topic_0200": "Microarrays",
+ "http://edamontology.org/topic_0202": "Pharmacology",
+ "http://edamontology.org/topic_0203": "Gene expression",
+ "http://edamontology.org/topic_0204": "Gene regulation",
+ "http://edamontology.org/topic_0208": "Pharmacogenomics",
+ "http://edamontology.org/topic_0209": "Medicinal chemistry",
+ "http://edamontology.org/topic_0210": "Fish",
+ "http://edamontology.org/topic_0211": "Flies",
+ "http://edamontology.org/topic_0213": "Mice or rats",
+ "http://edamontology.org/topic_0215": "Worms",
+ "http://edamontology.org/topic_0217": "Literature analysis",
+ "http://edamontology.org/topic_0218": "Natural language processing",
+ "http://edamontology.org/topic_0219": "Data submission, annotation and curation",
+ "http://edamontology.org/topic_0220": "Document, record and content management",
+ "http://edamontology.org/topic_0221": "Sequence annotation",
+ "http://edamontology.org/topic_0222": "Genome annotation",
+ "http://edamontology.org/topic_0593": "NMR",
+ "http://edamontology.org/topic_0594": "Sequence classification",
+ "http://edamontology.org/topic_0595": "Protein classification",
+ "http://edamontology.org/topic_0598": "Sequence motif or profile",
+ "http://edamontology.org/topic_0601": "Protein modifications",
+ "http://edamontology.org/topic_0602": "Molecular interactions, pathways and networks",
+ "http://edamontology.org/topic_0605": "Informatics",
+ "http://edamontology.org/topic_0606": "Literature data resources",
+ "http://edamontology.org/topic_0607": "Laboratory information management",
+ "http://edamontology.org/topic_0608": "Cell and tissue culture",
+ "http://edamontology.org/topic_0610": "Ecology",
+ "http://edamontology.org/topic_0611": "Electron microscopy",
+ "http://edamontology.org/topic_0612": "Cell cycle",
+ "http://edamontology.org/topic_0613": "Peptides and amino acids",
+ "http://edamontology.org/topic_0616": "Organelles",
+ "http://edamontology.org/topic_0617": "Ribosomes",
+ "http://edamontology.org/topic_0618": "Scents",
+ "http://edamontology.org/topic_0620": "Drugs and target structures",
+ "http://edamontology.org/topic_0621": "Model organisms",
+ "http://edamontology.org/topic_0622": "Genomics",
+ "http://edamontology.org/topic_0623": "Gene and protein families",
+ "http://edamontology.org/topic_0624": "Chromosomes",
+ "http://edamontology.org/topic_0625": "Genotype and phenotype",
+ "http://edamontology.org/topic_0629": "Gene expression and microarray",
+ "http://edamontology.org/topic_0632": "Probes and primers",
+ "http://edamontology.org/topic_0634": "Pathology",
+ "http://edamontology.org/topic_0635": "Specific protein resources",
+ "http://edamontology.org/topic_0637": "Taxonomy",
+ "http://edamontology.org/topic_0639": "Protein sequence analysis",
+ "http://edamontology.org/topic_0640": "Nucleic acid sequence analysis",
+ "http://edamontology.org/topic_0641": "Repeat sequences",
+ "http://edamontology.org/topic_0642": "Low complexity sequences",
+ "http://edamontology.org/topic_0644": "Proteome",
+ "http://edamontology.org/topic_0654": "DNA",
+ "http://edamontology.org/topic_0655": "Coding RNA",
+ "http://edamontology.org/topic_0659": "Functional, regulatory and non-coding RNA",
+ "http://edamontology.org/topic_0660": "rRNA",
+ "http://edamontology.org/topic_0663": "tRNA",
+ "http://edamontology.org/topic_0694": "Protein secondary structure",
+ "http://edamontology.org/topic_0697": "RNA structure",
+ "http://edamontology.org/topic_0698": "Protein tertiary structure",
+ "http://edamontology.org/topic_0722": "Nucleic acid classification",
+ "http://edamontology.org/topic_0724": "Protein families",
+ "http://edamontology.org/topic_0736": "Protein folds and structural domains",
+ "http://edamontology.org/topic_0740": "Nucleic acid sequence alignment",
+ "http://edamontology.org/topic_0741": "Protein sequence alignment",
+ "http://edamontology.org/topic_0747": "Nucleic acid sites and features",
+ "http://edamontology.org/topic_0748": "Protein sites and features",
+ "http://edamontology.org/topic_0749": "Transcription factors and regulatory sites",
+ "http://edamontology.org/topic_0751": "Phosphorylation sites",
+ "http://edamontology.org/topic_0753": "Metabolic pathways",
+ "http://edamontology.org/topic_0754": "Signaling pathways",
+ "http://edamontology.org/topic_0767": "Protein and peptide identification",
+ "http://edamontology.org/topic_0769": "Workflows",
+ "http://edamontology.org/topic_0770": "Data types and objects",
+ "http://edamontology.org/topic_0771": "Theoretical biology",
+ "http://edamontology.org/topic_0779": "Mitochondria",
+ "http://edamontology.org/topic_0780": "Plant biology",
+ "http://edamontology.org/topic_0781": "Virology",
+ "http://edamontology.org/topic_0782": "Fungi",
+ "http://edamontology.org/topic_0783": "Pathogens",
+ "http://edamontology.org/topic_0786": "Arabidopsis",
+ "http://edamontology.org/topic_0787": "Rice",
+ "http://edamontology.org/topic_0796": "Genetic mapping and linkage",
+ "http://edamontology.org/topic_0797": "Comparative genomics",
+ "http://edamontology.org/topic_0798": "Mobile genetic elements",
+ "http://edamontology.org/topic_0803": "Human disease",
+ "http://edamontology.org/topic_0804": "Immunology",
+ "http://edamontology.org/topic_0820": "Membrane and lipoproteins",
+ "http://edamontology.org/topic_0821": "Enzymes",
+ "http://edamontology.org/topic_0922": "Primers",
+ "http://edamontology.org/topic_1302": "PolyA signal or sites",
+ "http://edamontology.org/topic_1304": "CpG island and isochores",
+ "http://edamontology.org/topic_1305": "Restriction sites",
+ "http://edamontology.org/topic_1307": "Splice sites",
+ "http://edamontology.org/topic_1308": "Matrix/scaffold attachment sites",
+ "http://edamontology.org/topic_1311": "Operon",
+ "http://edamontology.org/topic_1312": "Promoters",
+ "http://edamontology.org/topic_1317": "Structural biology",
+ "http://edamontology.org/topic_1456": "Protein membrane regions",
+ "http://edamontology.org/topic_1770": "Structure comparison",
+ "http://edamontology.org/topic_1775": "Function analysis",
+ "http://edamontology.org/topic_1811": "Prokaryotes and Archaea",
+ "http://edamontology.org/topic_2225": "Protein databases",
+ "http://edamontology.org/topic_2226": "Structure determination",
+ "http://edamontology.org/topic_2229": "Cell biology",
+ "http://edamontology.org/topic_2230": "Classification",
+ "http://edamontology.org/topic_2232": "Lipoproteins",
+ "http://edamontology.org/topic_2257": "Phylogeny visualisation",
+ "http://edamontology.org/topic_2258": "Cheminformatics",
+ "http://edamontology.org/topic_2259": "Systems biology",
+ "http://edamontology.org/topic_2269": "Statistics and probability",
+ "http://edamontology.org/topic_2271": "Structure database search",
+ "http://edamontology.org/topic_2275": "Molecular modelling",
+ "http://edamontology.org/topic_2276": "Protein function prediction",
+ "http://edamontology.org/topic_2277": "SNP",
+ "http://edamontology.org/topic_2278": "Transmembrane protein prediction",
+ "http://edamontology.org/topic_2280": "Nucleic acid structure comparison",
+ "http://edamontology.org/topic_2397": "Exons",
+ "http://edamontology.org/topic_2399": "Gene transcription",
+ "http://edamontology.org/topic_2533": "DNA mutation",
+ "http://edamontology.org/topic_2640": "Oncology",
+ "http://edamontology.org/topic_2661": "Toxins and targets",
+ "http://edamontology.org/topic_2754": "Introns",
+ "http://edamontology.org/topic_2807": "Tool topic",
+ "http://edamontology.org/topic_2809": "Study topic",
+ "http://edamontology.org/topic_2811": "Nomenclature",
+ "http://edamontology.org/topic_2813": "Disease genes and proteins",
+ "http://edamontology.org/topic_2814": "Protein structure analysis",
+ "http://edamontology.org/topic_2815": "Human biology",
+ "http://edamontology.org/topic_2816": "Gene resources",
+ "http://edamontology.org/topic_2817": "Yeast",
+ "http://edamontology.org/topic_2818": "Eukaryotes",
+ "http://edamontology.org/topic_2819": "Invertebrates",
+ "http://edamontology.org/topic_2820": "Vertebrates",
+ "http://edamontology.org/topic_2821": "Unicellular eukaryotes",
+ "http://edamontology.org/topic_2826": "Protein structure alignment",
+ "http://edamontology.org/topic_2828": "X-ray diffraction",
+ "http://edamontology.org/topic_2829": "Ontologies, nomenclature and classification",
+ "http://edamontology.org/topic_2830": "Immunoproteins and antigens",
+ "http://edamontology.org/topic_2839": "Molecules",
+ "http://edamontology.org/topic_2840": "Toxicology",
+ "http://edamontology.org/topic_2842": "High-throughput sequencing",
+ "http://edamontology.org/topic_2846": "Gene regulatory networks",
+ "http://edamontology.org/topic_2847": "Disease (specific)",
+ "http://edamontology.org/topic_2867": "VNTR",
+ "http://edamontology.org/topic_2868": "Microsatellites",
+ "http://edamontology.org/topic_2869": "RFLP",
+ "http://edamontology.org/topic_2885": "DNA polymorphism",
+ "http://edamontology.org/topic_2953": "Nucleic acid design",
+ "http://edamontology.org/topic_3032": "Primer or probe design",
+ "http://edamontology.org/topic_3038": "Structure databases",
+ "http://edamontology.org/topic_3039": "Nucleic acid structure",
+ "http://edamontology.org/topic_3041": "Sequence databases",
+ "http://edamontology.org/topic_3042": "Nucleic acid sequences",
+ "http://edamontology.org/topic_3043": "Protein sequences",
+ "http://edamontology.org/topic_3044": "Protein interaction networks",
+ "http://edamontology.org/topic_3047": "Molecular biology",
+ "http://edamontology.org/topic_3048": "Mammals",
+ "http://edamontology.org/topic_3050": "Biodiversity",
+ "http://edamontology.org/topic_3052": "Sequence clusters and classification",
+ "http://edamontology.org/topic_3053": "Genetics",
+ "http://edamontology.org/topic_3055": "Quantitative genetics",
+ "http://edamontology.org/topic_3056": "Population genetics",
+ "http://edamontology.org/topic_3060": "Regulatory RNA",
+ "http://edamontology.org/topic_3061": "Documentation and help",
+ "http://edamontology.org/topic_3062": "Genetic organisation",
+ "http://edamontology.org/topic_3063": "Medical informatics",
+ "http://edamontology.org/topic_3064": "Developmental biology",
+ "http://edamontology.org/topic_3065": "Embryology",
+ "http://edamontology.org/topic_3067": "Anatomy",
+ "http://edamontology.org/topic_3068": "Literature and language",
+ "http://edamontology.org/topic_3070": "Biology",
+ "http://edamontology.org/topic_3071": "Biological databases",
+ "http://edamontology.org/topic_3072": "Sequence feature detection",
+ "http://edamontology.org/topic_3073": "Nucleic acid feature detection",
+ "http://edamontology.org/topic_3074": "Protein feature detection",
+ "http://edamontology.org/topic_3075": "Biological system modelling",
+ "http://edamontology.org/topic_3077": "Data acquisition",
+ "http://edamontology.org/topic_3078": "Genes and proteins resources",
+ "http://edamontology.org/topic_3118": "Protein topological domains",
+ "http://edamontology.org/topic_3120": "Protein variants",
+ "http://edamontology.org/topic_3123": "Expression signals",
+ "http://edamontology.org/topic_3125": "DNA binding sites",
+ "http://edamontology.org/topic_3126": "Nucleic acid repeats",
+ "http://edamontology.org/topic_3127": "DNA replication and recombination",
+ "http://edamontology.org/topic_3135": "Signal or transit peptide",
+ "http://edamontology.org/topic_3139": "Sequence tagged sites",
+ "http://edamontology.org/topic_3168": "Sequencing",
+ "http://edamontology.org/topic_3169": "ChIP-seq",
+ "http://edamontology.org/topic_3170": "RNA-Seq",
+ "http://edamontology.org/topic_3171": "DNA methylation",
+ "http://edamontology.org/topic_3172": "Metabolomics",
+ "http://edamontology.org/topic_3173": "Epigenomics",
+ "http://edamontology.org/topic_3174": "Metagenomics",
+ "http://edamontology.org/topic_3175": "Structural variation",
+ "http://edamontology.org/topic_3176": "DNA packaging",
+ "http://edamontology.org/topic_3177": "DNA-Seq",
+ "http://edamontology.org/topic_3178": "RNA-Seq alignment",
+ "http://edamontology.org/topic_3179": "ChIP-on-chip",
+ "http://edamontology.org/topic_3263": "Data security",
+ "http://edamontology.org/topic_3277": "Sample collections",
+ "http://edamontology.org/topic_3292": "Biochemistry",
+ "http://edamontology.org/topic_3293": "Phylogenetics",
+ "http://edamontology.org/topic_3295": "Epigenetics",
+ "http://edamontology.org/topic_3297": "Biotechnology",
+ "http://edamontology.org/topic_3298": "Phenomics",
+ "http://edamontology.org/topic_3299": "Evolutionary biology",
+ "http://edamontology.org/topic_3300": "Physiology",
+ "http://edamontology.org/topic_3301": "Microbiology",
+ "http://edamontology.org/topic_3302": "Parasitology",
+ "http://edamontology.org/topic_3303": "Medicine",
+ "http://edamontology.org/topic_3304": "Neurobiology",
+ "http://edamontology.org/topic_3305": "Public health and epidemiology",
+ "http://edamontology.org/topic_3306": "Biophysics",
+ "http://edamontology.org/topic_3307": "Computational biology",
+ "http://edamontology.org/topic_3308": "Transcriptomics",
+ "http://edamontology.org/topic_3314": "Chemistry",
+ "http://edamontology.org/topic_3315": "Mathematics",
+ "http://edamontology.org/topic_3316": "Computer science",
+ "http://edamontology.org/topic_3318": "Physics",
+ "http://edamontology.org/topic_3320": "RNA splicing",
+ "http://edamontology.org/topic_3321": "Molecular genetics",
+ "http://edamontology.org/topic_3322": "Respiratory medicine",
+ "http://edamontology.org/topic_3323": "Metabolic disease",
+ "http://edamontology.org/topic_3324": "Infectious disease",
+ "http://edamontology.org/topic_3325": "Rare diseases",
+ "http://edamontology.org/topic_3332": "Computational chemistry",
+ "http://edamontology.org/topic_3334": "Neurology",
+ "http://edamontology.org/topic_3335": "Cardiology",
+ "http://edamontology.org/topic_3336": "Drug discovery",
+ "http://edamontology.org/topic_3337": "Biobank",
+ "http://edamontology.org/topic_3338": "Mouse clinic",
+ "http://edamontology.org/topic_3339": "Microbial collection",
+ "http://edamontology.org/topic_3340": "Cell culture collection",
+ "http://edamontology.org/topic_3341": "Clone library",
+ "http://edamontology.org/topic_3342": "Translational medicine",
+ "http://edamontology.org/topic_3343": "Compound libraries and screening",
+ "http://edamontology.org/topic_3344": "Biomedical science",
+ "http://edamontology.org/topic_3345": "Data identity and mapping",
+ "http://edamontology.org/topic_3346": "Sequence search",
+ "http://edamontology.org/topic_3360": "Biomarkers",
+ "http://edamontology.org/topic_3361": "Laboratory techniques",
+ "http://edamontology.org/topic_3365": "Data architecture, analysis and design",
+ "http://edamontology.org/topic_3366": "Data integration and warehousing",
+ "http://edamontology.org/topic_3368": "Biomaterials",
+ "http://edamontology.org/topic_3369": "Chemical biology",
+ "http://edamontology.org/topic_3370": "Analytical chemistry",
+ "http://edamontology.org/topic_3371": "Synthetic chemistry",
+ "http://edamontology.org/topic_3372": "Software engineering",
+ "http://edamontology.org/topic_3373": "Drug development",
+ "http://edamontology.org/topic_3374": "Biotherapeutics",
+ "http://edamontology.org/topic_3375": "Drug metabolism",
+ "http://edamontology.org/topic_3376": "Medicines research and development",
+ "http://edamontology.org/topic_3377": "Safety sciences",
+ "http://edamontology.org/topic_3378": "Pharmacovigilance",
+ "http://edamontology.org/topic_3379": "Preclinical and clinical studies",
+ "http://edamontology.org/topic_3382": "Imaging",
+ "http://edamontology.org/topic_3383": "Bioimaging",
+ "http://edamontology.org/topic_3384": "Medical imaging",
+ "http://edamontology.org/topic_3385": "Light microscopy",
+ "http://edamontology.org/topic_3386": "Laboratory animal science",
+ "http://edamontology.org/topic_3387": "Marine biology",
+ "http://edamontology.org/topic_3388": "Molecular medicine",
+ "http://edamontology.org/topic_3390": "Nutritional science",
+ "http://edamontology.org/topic_3391": "Omics",
+ "http://edamontology.org/topic_3393": "Quality affairs",
+ "http://edamontology.org/topic_3394": "Regulatory affairs",
+ "http://edamontology.org/topic_3395": "Regenerative medicine",
+ "http://edamontology.org/topic_3396": "Systems medicine",
+ "http://edamontology.org/topic_3397": "Veterinary medicine",
+ "http://edamontology.org/topic_3398": "Bioengineering",
+ "http://edamontology.org/topic_3399": "Geriatric medicine",
+ "http://edamontology.org/topic_3400": "Allergy, clinical immunology and immunotherapeutics",
+ "http://edamontology.org/topic_3401": "Pain medicine",
+ "http://edamontology.org/topic_3402": "Anaesthesiology",
+ "http://edamontology.org/topic_3403": "Critical care medicine",
+ "http://edamontology.org/topic_3404": "Dermatology",
+ "http://edamontology.org/topic_3405": "Dentistry",
+ "http://edamontology.org/topic_3406": "Ear, nose and throat medicine",
+ "http://edamontology.org/topic_3407": "Endocrinology and metabolism",
+ "http://edamontology.org/topic_3408": "Haematology",
+ "http://edamontology.org/topic_3409": "Gastroenterology",
+ "http://edamontology.org/topic_3410": "Gender medicine",
+ "http://edamontology.org/topic_3411": "Gynaecology and obstetrics",
+ "http://edamontology.org/topic_3412": "Hepatic and biliary medicine",
+ "http://edamontology.org/topic_3413": "Infectious tropical disease",
+ "http://edamontology.org/topic_3414": "Trauma medicine",
+ "http://edamontology.org/topic_3415": "Medical toxicology",
+ "http://edamontology.org/topic_3416": "Musculoskeletal medicine",
+ "http://edamontology.org/topic_3417": "Opthalmology",
+ "http://edamontology.org/topic_3418": "Paediatrics",
+ "http://edamontology.org/topic_3419": "Psychiatry",
+ "http://edamontology.org/topic_3420": "Reproductive health",
+ "http://edamontology.org/topic_3421": "Surgery",
+ "http://edamontology.org/topic_3422": "Urology and nephrology",
+ "http://edamontology.org/topic_3423": "Complementary medicine",
+ "http://edamontology.org/topic_3444": "MRI",
+ "http://edamontology.org/topic_3448": "Neutron diffraction",
+ "http://edamontology.org/topic_3452": "Tomography",
+ "http://edamontology.org/topic_3473": "Data mining",
+ "http://edamontology.org/topic_3474": "Machine learning",
+ "http://edamontology.org/topic_3489": "Database management",
+ "http://edamontology.org/topic_3500": "Zoology",
+ "http://edamontology.org/topic_3510": "Protein sites, features and motifs",
+ "http://edamontology.org/topic_3511": "Nucleic acid sites, features and motifs",
+ "http://edamontology.org/topic_3512": "Gene transcripts",
+ "http://edamontology.org/topic_3514": "Protein-ligand interactions",
+ "http://edamontology.org/topic_3515": "Protein-drug interactions",
+ "http://edamontology.org/topic_3516": "Genotyping experiment",
+ "http://edamontology.org/topic_3517": "GWAS study",
+ "http://edamontology.org/topic_3518": "Microarray experiment",
+ "http://edamontology.org/topic_3519": "PCR experiment",
+ "http://edamontology.org/topic_3520": "Proteomics experiment",
+ "http://edamontology.org/topic_3521": "2D PAGE experiment",
+ "http://edamontology.org/topic_3522": "Northern blot experiment",
+ "http://edamontology.org/topic_3523": "RNAi experiment",
+ "http://edamontology.org/topic_3524": "Simulation experiment",
+ "http://edamontology.org/topic_3525": "Protein-nucleic acid interactions",
+ "http://edamontology.org/topic_3526": "Protein-protein interactions",
+ "http://edamontology.org/topic_3527": "Cellular process pathways",
+ "http://edamontology.org/topic_3528": "Disease pathways",
+ "http://edamontology.org/topic_3529": "Environmental information processing pathways",
+ "http://edamontology.org/topic_3530": "Genetic information processing pathways",
+ "http://edamontology.org/topic_3531": "Protein super-secondary structure",
+ "http://edamontology.org/topic_3533": "Protein active sites",
+ "http://edamontology.org/topic_3534": "Protein binding sites",
+ "http://edamontology.org/topic_3535": "Protein-nucleic acid binding sites",
+ "http://edamontology.org/topic_3536": "Protein cleavage sites",
+ "http://edamontology.org/topic_3537": "Protein chemical modifications",
+ "http://edamontology.org/topic_3538": "Protein disordered structure",
+ "http://edamontology.org/topic_3539": "Protein domains",
+ "http://edamontology.org/topic_3540": "Protein key folding sites",
+ "http://edamontology.org/topic_3541": "Protein post-translational modifications",
+ "http://edamontology.org/topic_3542": "Protein secondary structure",
+ "http://edamontology.org/topic_3543": "Protein sequence repeats",
+ "http://edamontology.org/topic_3544": "Protein signal peptides",
+ "http://edamontology.org/topic_3569": "Applied mathematics",
+ "http://edamontology.org/topic_3570": "Pure mathematics",
+ "http://edamontology.org/topic_3571": "Data governance",
+ "http://edamontology.org/topic_3572": "Data quality management",
+ "http://edamontology.org/topic_3573": "Freshwater biology",
+ "http://edamontology.org/topic_3574": "Human genetics",
+ "http://edamontology.org/topic_3575": "Tropical medicine",
+ "http://edamontology.org/topic_3576": "Medical biotechnology",
+ "http://edamontology.org/topic_3577": "Personalised medicine",
+ "http://edamontology.org/topic_3656": "Immunoprecipitation experiment",
+ "http://edamontology.org/topic_3673": "Whole genome sequencing",
+ "http://edamontology.org/topic_3674": "Methylated DNA immunoprecipitation",
+ "http://edamontology.org/topic_3676": "Exome sequencing",
+ "http://edamontology.org/topic_3678": "Experimental design and studies",
+ "http://edamontology.org/topic_3679": "Animal study",
+ "http://edamontology.org/topic_3697": "Microbial ecology",
+ "http://edamontology.org/topic_3794": "RNA immunoprecipitation",
+ "http://edamontology.org/topic_3796": "Population genomics",
+ "http://edamontology.org/topic_3810": "Agricultural science",
+ "http://edamontology.org/topic_3837": "Metagenomic sequencing",
+ "http://edamontology.org/topic_3855": "Environmental science",
+ "http://edamontology.org/topic_3892": "Biomolecular simulation",
+ "http://edamontology.org/topic_3895": "Synthetic biology",
+ "http://edamontology.org/topic_3912": "Genetic engineering",
+ "http://edamontology.org/topic_3922": "Proteogenomics",
+ "http://edamontology.org/topic_3930": "Immunogenetics",
+ "http://edamontology.org/topic_3934": "Cytometry",
+ "http://edamontology.org/topic_3940": "Chromosome conformation capture",
+ "http://edamontology.org/topic_3941": "Metatranscriptomics",
+ "http://edamontology.org/topic_3943": "Paleogenomics",
+ "http://edamontology.org/topic_3944": "Cladistics",
+ "http://edamontology.org/topic_3945": "Molecular evolution",
+ "http://edamontology.org/topic_3948": "Immunoinformatics",
+ "http://edamontology.org/topic_3954": "Echography",
+ "http://edamontology.org/topic_3955": "Fluxomics",
+ "http://edamontology.org/topic_3957": "Protein interaction experiment",
+ "http://edamontology.org/topic_3958": "Copy number variation",
+ "http://edamontology.org/topic_3959": "Cytogenetics",
+ "http://edamontology.org/topic_3966": "Vaccinology",
+ "http://edamontology.org/topic_3967": "Immunomics",
+ "http://edamontology.org/topic_3974": "Epistasis",
+ "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass": "Obsolete concept (EDAM)"
+}
\ No newline at end of file
diff --git a/src/test/java/nl/esciencecenter/controller/AlternativesControllerTest.java b/src/test/java/nl/esciencecenter/controller/AlternativesControllerTest.java
new file mode 100644
index 0000000..14e2f13
--- /dev/null
+++ b/src/test/java/nl/esciencecenter/controller/AlternativesControllerTest.java
@@ -0,0 +1,136 @@
+package nl.esciencecenter.controller;
+
+import static org.hamcrest.Matchers.*;
+import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.*;
+import static org.junit.jupiter.api.Assertions.*;
+
+import java.nio.charset.StandardCharsets;
+
+import org.junit.jupiter.api.Test;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.boot.test.autoconfigure.web.servlet.AutoConfigureMockMvc;
+import org.springframework.boot.test.context.SpringBootTest;
+import org.springframework.http.MediaType;
+import org.springframework.mock.web.MockMultipartFile;
+import org.springframework.test.web.servlet.MockMvc;
+import org.springframework.test.web.servlet.request.MockMvcRequestBuilders;
+
+/**
+ * Integrationstest für {@link AlternativesController}.
+ *
+ * Testet den vollständigen HTTP-Layer des {@code POST /alternatives/parse}
+ * Endpunkts: Routing, Multipart-Handling, JSON-Serialisierung und
+ * Fehlerbehandlung. Ergänzt die Unit-Tests in {@link nl.esciencecenter.restape.CwlParserTest},
+ * die den Parser isoliert prüfen.
+ */
+@SpringBootTest
+@AutoConfigureMockMvc
+class AlternativesControllerTest {
+
+ @Autowired
+ private MockMvc mvc;
+
+ // ── Hilfsmethoden ────────────────────────────────────────────────────────
+
+ /** Lädt die Test-Fixture aus dem Classpath. */
+ private MockMultipartFile fixtureFile(String resourceName) throws Exception {
+ byte[] bytes = getClass().getClassLoader()
+ .getResourceAsStream(resourceName).readAllBytes();
+ return new MockMultipartFile("cwl_file", resourceName,
+ MediaType.TEXT_PLAIN_VALUE, bytes);
+ }
+
+ /** Erstellt eine In-Memory-CWL-Datei mit dem angegebenen Inhalt. */
+ private MockMultipartFile inlineCwl(String content) {
+ return new MockMultipartFile("cwl_file", "workflow.cwl",
+ MediaType.TEXT_PLAIN_VALUE,
+ content.getBytes(StandardCharsets.UTF_8));
+ }
+
+ // ── Happy Path ───────────────────────────────────────────────────────────
+
+ @Test
+ void testParseCwlPass() throws Exception {
+ mvc.perform(MockMvcRequestBuilders.multipart("/alternatives/parse")
+ .file(fixtureFile("test_workflow.cwl"))
+ .accept(MediaType.APPLICATION_JSON))
+ .andExpect(status().isOk())
+ .andExpect(content().contentType(MediaType.APPLICATION_JSON))
+ .andExpect(jsonPath("$.nodes", hasSize(5)))
+ .andExpect(jsonPath("$.edges", hasSize(4)))
+ .andExpect(jsonPath("$.inputs", hasSize(1)))
+ .andExpect(jsonPath("$.outputs", hasSize(1)));
+ }
+
+ @Test
+ void testParseCwlToolLabelsNoSuffix() throws Exception {
+ mvc.perform(MockMvcRequestBuilders.multipart("/alternatives/parse")
+ .file(fixtureFile("test_workflow.cwl"))
+ .accept(MediaType.APPLICATION_JSON))
+ .andExpect(status().isOk())
+ .andExpect(jsonPath("$.nodes[?(@.type=='tool')].label",
+ everyItem(not(matchesRegex(".*_\\d+$")))));
+ }
+
+ @Test
+ void testParseCwlInputEdamUri() throws Exception {
+ mvc.perform(MockMvcRequestBuilders.multipart("/alternatives/parse")
+ .file(fixtureFile("test_workflow.cwl"))
+ .accept(MediaType.APPLICATION_JSON))
+ .andExpect(status().isOk())
+ .andExpect(jsonPath("$.inputs[0].id",
+ is("http://edamontology.org/format_3728")));
+ }
+
+ // ── Fehlerbehandlung (HTTP 400) ───────────────────────────────────────────
+
+ @Test
+ void testParseCwlWrongClassFail() throws Exception {
+ String cwl = "class: CommandLineTool\ncwlVersion: v1.2\n";
+ mvc.perform(MockMvcRequestBuilders.multipart("/alternatives/parse")
+ .file(inlineCwl(cwl))
+ .accept(MediaType.APPLICATION_JSON))
+ .andExpect(status().isBadRequest());
+ }
+
+ @Test
+ void testParseCwlWrongVersionFail() throws Exception {
+ String cwl = "class: Workflow\ncwlVersion: v1.0\nsteps:\n ToolA: {}\n";
+ mvc.perform(MockMvcRequestBuilders.multipart("/alternatives/parse")
+ .file(inlineCwl(cwl))
+ .accept(MediaType.APPLICATION_JSON))
+ .andExpect(status().isBadRequest());
+ }
+
+ @Test
+ void testParseCwlEmptyFileFail() throws Exception {
+ mvc.perform(MockMvcRequestBuilders.multipart("/alternatives/parse")
+ .file(inlineCwl(""))
+ .accept(MediaType.APPLICATION_JSON))
+ .andExpect(status().isBadRequest());
+ }
+
+ @Test
+ void testParseCwlInvalidYamlFail() throws Exception {
+ mvc.perform(MockMvcRequestBuilders.multipart("/alternatives/parse")
+ .file(inlineCwl("{ not: valid: yaml: [}"))
+ .accept(MediaType.APPLICATION_JSON))
+ .andExpect(status().isBadRequest());
+ }
+
+ // ── Falsche HTTP-Methode ──────────────────────────────────────────────────
+
+ @Test
+ void testParseCwlGetFail() throws Exception {
+ mvc.perform(MockMvcRequestBuilders.get("/alternatives/parse")
+ .accept(MediaType.APPLICATION_JSON))
+ .andExpect(status().isMethodNotAllowed());
+ }
+
+ @Test
+ void testParseCwlNoContentTypeFail() throws Exception {
+ mvc.perform(MockMvcRequestBuilders.post("/alternatives/parse")
+ .accept(MediaType.APPLICATION_JSON))
+ .andExpect(status().isUnsupportedMediaType());
+ }
+}
diff --git a/src/test/java/nl/esciencecenter/restape/CwlParserTest.java b/src/test/java/nl/esciencecenter/restape/CwlParserTest.java
new file mode 100644
index 0000000..e1e72d6
--- /dev/null
+++ b/src/test/java/nl/esciencecenter/restape/CwlParserTest.java
@@ -0,0 +1,133 @@
+package nl.esciencecenter.restape;
+
+import nl.esciencecenter.controller.dto.GraphNode;
+import nl.esciencecenter.controller.dto.ParseResponse;
+import org.junit.jupiter.api.Test;
+import org.springframework.boot.test.context.SpringBootTest;
+
+import java.io.ByteArrayInputStream;
+import java.io.InputStream;
+import java.nio.charset.StandardCharsets;
+import java.util.function.UnaryOperator;
+
+import static org.junit.jupiter.api.Assertions.*;
+
+@SpringBootTest
+class CwlParserTest {
+
+ private static final UnaryOperator IDENTITY = uri -> uri;
+
+ private InputStream fixture(String name) {
+ return getClass().getClassLoader().getResourceAsStream(name);
+ }
+
+ private InputStream cwl(String content) {
+ return new ByteArrayInputStream(content.getBytes(StandardCharsets.UTF_8));
+ }
+
+ // ── Parsing ──────────────────────────────────────────────────────────────
+
+ @Test
+ void testParseCorrectNodeCount() throws Exception {
+ ParseResponse result = CwlParser.parse(fixture("test_workflow.cwl"), IDENTITY);
+ // 1 input node + 3 tool nodes + 1 output node
+ assertEquals(5, result.getNodes().size());
+ }
+
+ @Test
+ void testParseToolLabelsNoSuffix() throws Exception {
+ ParseResponse result = CwlParser.parse(fixture("test_workflow.cwl"), IDENTITY);
+ long toolCount = result.getNodes().stream()
+ .filter(n -> n.getType() == GraphNode.NodeType.tool)
+ .count();
+ assertEquals(3, toolCount);
+ result.getNodes().stream()
+ .filter(n -> n.getType() == GraphNode.NodeType.tool)
+ .forEach(n -> assertFalse(n.getLabel().matches(".*_\\d+$"),
+ "Tool label should not contain APE suffix: " + n.getLabel()));
+ }
+
+ @Test
+ void testParseCorrectEdgeCount() throws Exception {
+ ParseResponse result = CwlParser.parse(fixture("test_workflow.cwl"), IDENTITY);
+ // input→A, A→B, B→C, C→output = 4 edges
+ assertEquals(4, result.getEdges().size());
+ }
+
+ @Test
+ void testParseDataflowOrder() throws Exception {
+ ParseResponse result = CwlParser.parse(fixture("test_workflow.cwl"), IDENTITY);
+ assertTrue(result.getEdges().stream()
+ .anyMatch(e -> "ToolA_01".equals(e.getSource()) && "ToolB_01".equals(e.getTarget())));
+ assertTrue(result.getEdges().stream()
+ .anyMatch(e -> "ToolB_01".equals(e.getSource()) && "ToolC_01".equals(e.getTarget())));
+ }
+
+ @Test
+ void testParseInputOutputTuples() throws Exception {
+ ParseResponse result = CwlParser.parse(fixture("test_workflow.cwl"), IDENTITY);
+ assertEquals(1, result.getInputs().size());
+ assertEquals(1, result.getOutputs().size());
+ assertEquals("http://edamontology.org/format_3728", result.getInputs().get(0).id);
+ assertEquals("http://edamontology.org/format_3244", result.getOutputs().get(0).id);
+ }
+
+ // ── Robustheit ───────────────────────────────────────────────────────────
+
+ @Test
+ void testParseWrongClassFail() {
+ String doc = "class: CommandLineTool\ncwlVersion: v1.2\n";
+ assertThrows(IllegalArgumentException.class,
+ () -> CwlParser.parse(cwl(doc), IDENTITY));
+ }
+
+ @Test
+ void testParseWrongVersionFail() {
+ String doc = "class: Workflow\ncwlVersion: v1.0\nsteps:\n ToolA: {}\n";
+ assertThrows(IllegalArgumentException.class,
+ () -> CwlParser.parse(cwl(doc), IDENTITY));
+ }
+
+ @Test
+ void testParseEmptyStepsFail() {
+ String doc = "class: Workflow\ncwlVersion: v1.2\nsteps: {}\n";
+ assertThrows(IllegalArgumentException.class,
+ () -> CwlParser.parse(cwl(doc), IDENTITY));
+ }
+
+ @Test
+ void testParseMissingEdamAnnotations() throws Exception {
+ String doc = """
+ class: Workflow
+ cwlVersion: v1.2
+ inputs:
+ input_1:
+ type: File
+ outputs:
+ output_1:
+ type: File
+ outputSource: ToolA_01/output_1
+ steps:
+ ToolA_01:
+ run: ToolA.cwl
+ in:
+ input_1: input_1
+ out: [output_1]
+ """;
+ ParseResponse result = CwlParser.parse(cwl(doc), IDENTITY);
+ assertEquals(1, result.getNodes().stream().filter(n -> n.getType() == GraphNode.NodeType.tool).count());
+ assertTrue(result.getInputs().isEmpty(), "No EDAM tuples without format annotations");
+ }
+
+ @Test
+ void testParseEmptyFileFail() {
+ assertThrows(IllegalArgumentException.class,
+ () -> CwlParser.parse(cwl(""), IDENTITY));
+ }
+
+ @Test
+ void testParseInvalidYamlFail() {
+ assertThrows(IllegalArgumentException.class,
+ () -> CwlParser.parse(cwl("{ not: valid: yaml: [}"), IDENTITY));
+ }
+}
diff --git a/src/test/java/nl/esciencecenter/restape/EdamLabelsTest.java b/src/test/java/nl/esciencecenter/restape/EdamLabelsTest.java
new file mode 100644
index 0000000..6178d57
--- /dev/null
+++ b/src/test/java/nl/esciencecenter/restape/EdamLabelsTest.java
@@ -0,0 +1,94 @@
+package nl.esciencecenter.restape;
+
+import org.junit.jupiter.api.BeforeEach;
+import org.junit.jupiter.api.Test;
+import org.springframework.boot.test.context.SpringBootTest;
+
+import java.lang.reflect.Field;
+import java.util.Map;
+
+import static org.junit.jupiter.api.Assertions.*;
+
+/**
+ * Verifikation der O(1)-URI-Auflösung nach Initialisierung.
+ *
+ * Das Laden von edam_labels.json wird per Reflection umgangen, um die Tests
+ * von Classpath-Ressourcen unabhängig zu halten. Getestet wird die
+ * Map-Lookup-Logik und der shortForm-Fallback.
+ */
+@SpringBootTest
+class EdamLabelsTest {
+
+ private EdamLabels edamLabels;
+
+ @BeforeEach
+ void setUp() throws Exception {
+ edamLabels = new EdamLabels();
+ injectLabels(Map.of(
+ "http://edamontology.org/format_3728", "LocARNA PP",
+ "http://edamontology.org/format_3244", "mzXML"
+ ));
+ }
+
+ /** Injects a pre-built map to bypass JSON file loading. */
+ private void injectLabels(Map map) throws Exception {
+ Field field = EdamLabels.class.getDeclaredField("labels");
+ field.setAccessible(true);
+ field.set(edamLabels, map);
+ }
+
+ @Test
+ void testResolveKnownUri() {
+ assertEquals("LocARNA PP", edamLabels.resolve("http://edamontology.org/format_3728"));
+ }
+
+ @Test
+ void testResolveSecondKnownUri() {
+ assertEquals("mzXML", edamLabels.resolve("http://edamontology.org/format_3244"));
+ }
+
+ @Test
+ void testResolveUnknownUriFallback() {
+ assertEquals("format_9999", edamLabels.resolve("http://edamontology.org/format_9999"));
+ }
+
+ @Test
+ void testResolveNullReturnsEmpty() {
+ assertEquals("", edamLabels.resolve(null));
+ }
+
+ @Test
+ void testResolveBlankReturnsEmpty() {
+ assertEquals("", edamLabels.resolve(" "));
+ }
+
+ @Test
+ void testResolveLookupIsO1() {
+ // After initialization the backing structure is a HashMap — verify by
+ // measuring that 1 000 consecutive lookups complete well under 50 ms.
+ long start = System.nanoTime();
+ for (int i = 0; i < 1_000; i++) {
+ edamLabels.resolve("http://edamontology.org/format_3728");
+ }
+ long elapsedMs = (System.nanoTime() - start) / 1_000_000;
+ assertTrue(elapsedMs < 50,
+ "1 000 lookups should complete in <50 ms for O(1) map, took: " + elapsedMs + " ms");
+ }
+
+ @Test
+ void testShortFormHashFragment() {
+ assertEquals("label", EdamLabels.shortForm("http://example.org#label"));
+ }
+
+ @Test
+ void testShortFormSlashPath() {
+ assertEquals("format_3728", EdamLabels.shortForm("http://edamontology.org/format_3728"));
+ }
+
+ @Test
+ void testResolveBeforeLoadFallback() throws Exception {
+ EdamLabels uninitialised = new EdamLabels();
+ // labels field is null → should return short form, not throw
+ assertEquals("format_3728", uninitialised.resolve("http://edamontology.org/format_3728"));
+ }
+}
diff --git a/src/test/resources/test_workflow.cwl b/src/test/resources/test_workflow.cwl
new file mode 100644
index 0000000..a8547da
--- /dev/null
+++ b/src/test/resources/test_workflow.cwl
@@ -0,0 +1,27 @@
+class: Workflow
+cwlVersion: v1.2
+inputs:
+ input_1:
+ type: File
+ format: http://edamontology.org/format_3728
+outputs:
+ output_1:
+ type: File
+ format: http://edamontology.org/format_3244
+ outputSource: ToolC_01/output_1
+steps:
+ ToolA_01:
+ run: ToolA.cwl
+ in:
+ input_1: input_1
+ out: [output_1]
+ ToolB_01:
+ run: ToolB.cwl
+ in:
+ input_1: ToolA_01/output_1
+ out: [output_1]
+ ToolC_01:
+ run: ToolC.cwl
+ in:
+ input_1: ToolB_01/output_1
+ out: [output_1]