Issues

• Improvement: Don't let components Self-Segment

  enhancementhelp wanted
  graph-genome/component_segmentation#50 · Filter by author josiahseaman opened on Nov 27, 2020

• CS might add links where none are given from odgi bin

  bug
  graph-genome/component_segmentation#48 · Filter by author subwaystation opened on May 12, 2020
  5

• estimate for segmentation.py memory usage

  graph-genome/component_segmentation#46 · Filter by author mr-c opened on May 6, 2020
  3

• Find Annotation and Knowledge Graphs to integrate

  documentationgood first issuequestion
  graph-genome/component_segmentation#41 · Filter by author josiahseaman opened on Apr 20, 2020
  10

• Turtle output

  graph-genome/component_segmentation#34 · Filter by author subwaystation opened on Apr 9, 2020
  5

  

• write internal tests for each refactored element

  graph-genome/component_segmentation#24 · Filter by author subwaystation opened on Apr 6, 2020

• optimize memory consumption

  graph-genome/component_segmentation#23 · Filter by author subwaystation opened on Apr 6, 2020
  1

• evaluate JSON libraries for parsing large ODGI bin files

  graph-genome/component_segmentation#22 · Filter by author subwaystation opened on Apr 6, 2020
  1

• Optimized Implementation by integrating with odgi

  question
  graph-genome/component_segmentation#19 · Filter by author josiahseaman opened on Apr 5, 2020

• v11-16: bin2file.json format changes

  documentationenhancement
  graph-genome/component_segmentation#16 · Filter by author josiahseaman opened on Mar 31, 2020

• v13: HaploBlocker Outputs available for Schematize

  enhancement
  graph-genome/component_segmentation#14 · Filter by author josiahseaman opened on Mar 27, 2020

• Ensure that deletions don’t cause unnecessary segmentation

  graph-genome/component_segmentation#1 · Filter by author josiahseaman opened on Jan 28, 2020