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  1. swine-shotgun-metagenomics swine-shotgun-metagenomics Public

    Analysis of shotgun metagenomics sequencing data from piglet fecal samples to investigate the relationships between piglet growth and gut microbiota composition and function

    Shell

  2. nextflow-qiime2-pipeline nextflow-qiime2-pipeline Public

    Automates all QIIME 2 steps typically run in ABBL's 16S rRNA amplicon analysis protocol. Can run everything from data import to producing a rarefaction curve with 1 command and 3 folders.

    Nextflow

  3. fungal-genome-annotation fungal-genome-annotation Public

    USDA-ARS NEA Bioinformatics 2023 workflow used for genome assembly, annotation, and phylogenomics, primarily featuring Funannotate v1.8.15.

    Shell

  4. R-graphics-microbiome-analysis R-graphics-microbiome-analysis Public

    R scripts and workflows for producing customizable figures for microbiome data, such as data from QIIME 2 outputs or differential abundance analysis (MaAsLin, LEfSe) results.

    R 1

  5. qiime-2-skin-microbiome qiime-2-skin-microbiome Public

    Analysis of skin microbiome of Rana luteiventris frogs from northern Idaho and eastern Washington using QIIME 2.

  6. bay-area-sights bay-area-sights Public

    Node.js CRUD website made for learning web development skills. The site is designed for submitters to add sightseeing spots in the California Bay Area.

    JavaScript