I build reproducible RNA-seq and bioinformatics workflows that turn research data into clean tables, publication-ready figures, and concise reports.
Website: Insights From BioData
MSc student in Bioinformatics and Systems Biology at Gebze Technical University.
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RNA-seq Workflow
A DESeq2 differential expression workflow on the public airway dataset. One script produces the QC summary, result tables, plots, and a short report. -
rMATS AD Skipped-Exon Analysis
A skipped-exon workflow for AD vs control RNA-seq data with high-confidence event tables and selected sashimi plots. CI checks the published tables against their summaries. -
Bioinformatics Portfolio Projects
Selected projects, including an interactive iMAT tool and a synthetic iMAT workflow. Each project lists its status and an output to inspect.
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GEMsplice HumanGEM Alzheimer Analysis
Alzheimer/control transcriptomics connected to Human-GEM metabolic modeling, with summary tables, figures, and a final report. -
Human-GEM GIMME Alzheimer Analysis
Context-specific AD and control models from Salmon outputs, with precomputed results, QC reports, and figures.
- RNA-seq differential expression analysis
- Alternative splicing analysis with rMATS-style event review
- Genome-scale metabolic modeling workflows with Human-GEM resources
- Publication-ready plots: PCA, heatmap, volcano plot, sashimi plot, and pathway figures
- Functional enrichment, pathway interpretation, and reproducible reporting
- Python, R, Bash, and MATLAB workflow automation for research data handling
R, Python, Bash, MATLAB, DESeq2, rMATS, Salmon, STAR, Human-GEM, iMAT, GIMME, ggplot2, pheatmap, pandas, Git, Linux
My public portfolio focuses on research support, data analysis, visualization, and reproducible reporting. It does not provide clinical diagnosis, treatment decisions, or patient-specific medical interpretation.