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I was using you package when I realized that the CCI Maps show a reverse direction for the the interaction. So I checked in you documentation and there it seems to be the same. Example using THBS1_ITGB1 from your documentation: https://stlearn.readthedocs.io/en/stable/tutorials/stLearn-CCI.html
If you focus on Stroma -> Mesenchymal in the network plot there is only one direction from stroma to mesenchymal:
This is also the case in the chord-plot and LR-CC-Map:
But in the CCI Map there is a dot shown from mesenchymal as sender and stroma as receiver while the reverse is missing:
Am I missing something here or did the labels in the CCI Map just get swapped?
I hope you can clarify this for me. Thank you!
Edit:
Just realized there is already another issue of this: #299
Activity
BradBalderson commentedon Sep 11, 2024
Good eye! I think you're right, I have mislabelled the x and y labels for CCI Map. Can correct by running the CCI Map, but instead:
yanwuanxin commentedon Oct 29, 2026
hellostlearn team,
may I ask if the above issue has been updated in the current version
newmana commentedon Oct 31, 2026
Fixed in #362