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@ComparativeGenomicsToolkit

ComparativeGenomicsToolkit

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  1. Comparative-Annotation-Toolkit Comparative-Annotation-Toolkit Public

    Python 190 51

  2. cactus cactus Public

    Official home of genome aligner based upon notion of Cactus graphs

    Python 706 125

  3. hal hal Public

    Hierarchical Alignment Format

    C++ 187 40

  4. hal2vg hal2vg Public

    Convert HAL to VG

    C++ 24 2

  5. taffy taffy Public

    This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files

    C 35 3

  6. paffy paffy Public

    Small C/CLI library of pairwise alignment format (paf) format tools used by Cactus

    C 7 2

Repositories

Showing 10 of 32 repositories
  • cactus Public

    Official home of genome aligner based upon notion of Cactus graphs

    ComparativeGenomicsToolkit/cactus's past year of commit activity
    Python 706 125 585 8 Updated Sep 12, 2026
  • hal2vg Public

    Convert HAL to VG

    ComparativeGenomicsToolkit/hal2vg's past year of commit activity
    C++ 24 MIT 2 7 0 Updated Sep 12, 2026
  • pinchesAndCacti Public

    Library for constructing pinch graphs and cactus graphs

    ComparativeGenomicsToolkit/pinchesAndCacti's past year of commit activity
    C 2 1 0 0 Updated Sep 12, 2026
  • cactus-gfa-tools Public
    ComparativeGenomicsToolkit/cactus-gfa-tools's past year of commit activity
    C++ 3 MIT 1 2 0 Updated Sep 11, 2026
  • sonLib Public

    Small general-purpose library for C and Python with an emphasis on bioinformatics.

    ComparativeGenomicsToolkit/sonLib's past year of commit activity
    C 8 MIT 4 4 4 Updated Sep 9, 2026
  • lastz Public Forked from lastz/lastz

    Program for aligning DNA sequences, a pairwise aligner.

    ComparativeGenomicsToolkit/lastz's past year of commit activity
    C 1 MIT 45 0 0 Updated Sep 4, 2026
  • taffy Public

    This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files

    ComparativeGenomicsToolkit/taffy's past year of commit activity
    C 35 MIT 3 11 3 Updated Sep 1, 2026
  • hal Public

    Hierarchical Alignment Format

    ComparativeGenomicsToolkit/hal's past year of commit activity
    C++ 187 40 111 0 Updated Sep 1, 2026
  • paffy Public

    Small C/CLI library of pairwise alignment format (paf) format tools used by Cactus

    ComparativeGenomicsToolkit/paffy's past year of commit activity
    C 7 2 2 0 Updated Sep 1, 2026
  • mafTools Public Forked from dentearl/mafTools

    Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

    ComparativeGenomicsToolkit/mafTools's past year of commit activity
    C 11 32 0 0 Updated Aug 11, 2026
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