GoyalLab

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1. CIPHER CIPHER Public

   CIPHER: Covariance Inference for Perturbation and High-dimensional Expression Response

   Jupyter Notebook 12

2. KeepingScore KeepingScore Public

   Code for 'Interpretable Thermodynamic Score-based Classification of Relaxation Excursions'

   Jupyter Notebook 4

3. singletCodeTools singletCodeTools Public

   This is a repository for tools created using singletCode. It contains the source code for both the command line and the python package.

   Jupyter Notebook 3

4. TwINFER TwINFER Public

   This is the repository for the code to simulate and use TwINFER framework for inferring gene regulatory network. It contains scripts for simulation, analyzing simulations and making plots for figures.

   Python 2

5. CIPHERWebsite CIPHERWebsite Public

   This is the project to host the website on Github for the CIPHER paper: https://goyallab.github.io/CIPHERWebsite/

   Python 2

6. TA_prevalence_constraints_public TA_prevalence_constraints_public Public

   MATLAB 1