Integrative-Transcriptomics
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DamageProfiler
DamageProfiler PublicA Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
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TechnicalReport-AssemblyBestPractice
TechnicalReport-AssemblyBestPractice PublicIn this technical report we elucidate/evaluate best practices for hybrid/long-read assembly.
Jupyter Notebook 3
Repositories
- TrepoGen-nextstrain Public
Nextstrain TrepoGen is a reproducible Nextstrain workflow for tracking bacterial diversity at both genome- and gene-level.
- PhageExpressionAtlas Public
PhageExpressionAtlas is a web application for interactive exploration of phage infections on the transcriptional level based on dual RNA-seq data.
- tss-captur-dsl2 Public Forked from Integrative-Transcriptomics/tss-captur
TSS-characterization pipeline for transcribed but unclassified RNA-transcripts
- TrepoGen-auspice Public Forked from nextstrain/auspice
Custom Auspice fork for visualizing global Treponema pallidum data with a focus on outer membrane proteins.
- trustpca Public
- GO-Compass-Trrackjs Public Forked from Integrative-Transcriptomics/GO-Compass
Visual navigation of multiple lists of GO terms with Trrack.js for provenance tracking.
- PTMVision-Student Public Forked from Integrative-Transcriptomics/PTMVision
Web application for the interactive visualization and exploration of post-translational modifications of proteins from open and closed search software.
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