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deps(python): bump the python-minor group with 3 updates - #606

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deps(python): bump the python-minor group with 3 updates#606
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Bumps the python-minor group with 3 updates: numpy, alembic and ruff.

Updates numpy from 2.5.2 to 2.5.3

Release notes

Sourced from numpy's releases.

v2.5.3 (Sep 6, 2026)

NumPy 2.5.3 Release Notes

The NumPy 2.5.3 is a patch release that fixes bugs discovered after the 2.5.2 release. Apart from the usual bug and maintenance work, there are a number of StringDType related fixes for problems discovered during the ongoing string work in the main branch.

This release supports Python versions 3.12-3.15

Changes

  • Casting a fixed-width byte string array (np.bytes_) to StringDType now raises TypeError when the bytes are not valid UTF-8. Previously the invalid bytes were stored as-is and later caused undefined behavior in string operations.

    (gh-32296)

  • MaskedArray._fill_value would become stale when ufuncs that change dtype left the result holding a fill_value typed for the old dtype. The mismatch was silent until something later called _check_fill_value, such as .view(), and then a TypeError would be raised. Now, when the copied fill_value is no longer valid for the new dtype, fall back to the default fill_value for that dtype instead of propagating the stale value. This may raise a ComplexWarning if the fill_value is complex and the new dtype is real.

    (gh-32423)

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Iason Krommydas
  • James Davies +
  • Joren Hammudoglu
  • Maanas Arora
  • Matti Picus
  • Nathan Goldbaum
  • Shikhar Goel +
  • Yeonho Kim +

Pull requests merged

A total of 27 pull requests were merged for this release.

  • #32235: MAINT: Prepare 2.5.x for further development

... (truncated)

Commits
  • dd88c0c Merge pull request #32511 from charris/prepare-2.5.3
  • edcac6a REL: Prepare for the NumPy 2.5.3 release
  • fd4d908 Merge pull request #32509 from charris/backport-32496
  • 65bb1da BUG: fix crash in ufunc.resolve_dtypes with a Python scalar type (#32496)
  • 294956e Merge pull request #32506 from charris/backport-32503
  • 26428d9 DOC: fix scipy docs links in intersphinx mapping (#32507)
  • 5fab1cb DOC: use static scipy doc site for intershpinx (#32503)
  • 7beed2f Merge pull request #32481 from ngoldbaum/stringdtype-backport
  • 8972f70 Merge pull request #32478 from charris/backport-32466
  • ab1b589 Merge pull request #32477 from charris/backport-32423
  • Additional commits viewable in compare view

Updates alembic from 1.19.1 to 1.19.2

Release notes

Sourced from alembic's releases.

1.19.2

Released: September 4, 2026

changed

  • [changed] [autogenerate] The autogenerate plugin for CHECK constraint detection by name, added in 1.19.0. for #508, is no longer enabled by default. It has been renamed from alembic.autogenerate.checkconstraint_byname to alembic.ext.checkconstraint_byname and no longer matches on the "alembic.autogenerate.*" wildcard, which remains the default plugin specification. The previous name will still function as well if placed in the plugins list explicitly, both to enable the plugin and within a "~" exclusion, so that an env.py written against 1.19.0 or 1.19.1 requires no change.

    The plugin is now recommended only for schemas that ensure the naming of all constraints using a client side naming convention, otherwise there's a persistent risk of false positives. See autogenerate_check_constraints for background on things to be aware of when using this plugin.

    As part of this change "type bound" CHECK constraints, which include constraints generated for the Boolean and Enum datatypes when the create_constraint parameter is set to True, are no longer ignored in the metadata side, so that normal name-based matching can occur for these constraints.

    References: #1859

usecase

  • [usecase] [autogenerate] [batch] The target of a ~sqlalchemy.schema.ForeignKey is now located using the ForeignKey.target_tokens and ForeignKey.target_table_key accessors added in SQLAlchemy 2.1, rather than by splitting the dotted string form of that target on ".". As a dot inside a schema, table or column name cannot be told apart from the separator between those names, a foreign key whose target name contained a dot was previously mis-parsed by autogenerate rendering as well as by batch migrations. The dotted string continues to be split when running against SQLAlchemy 2.0, where these accessors are not present. Thanks to Gyanu Mayank for the initial pull request.

    References: #1860

Commits

Updates ruff from 0.16.6 to 0.16.7

Release notes

Sourced from ruff's releases.

0.16.7

Release Notes

Released on 2026-09-10.

Preview features

  • [ruff] Add rule for default values on method receivers (RUF077) (#26700)
  • [ruff] Recognize re.prefixmatch (RUF039, RUF055) (#28311)

Bug fixes

  • Alternate nested quotes inside format spec interpolations (#28259)
  • [flake8-implicit-str-concat] Mark fix unsafe when it creates a docstring (ISC003) (#27981)
  • [flake8-tidy-imports] Skip fixes for multi-member imports (TID254) (#26584)
  • [pylint] Gate ImportCycleError on Python 3.15 (PLW0133) (#28310)

Rule changes

  • Correct D211 and D203 rule conflict diagnostic (#28444)
  • Recognize slice and frozendict generics (#28477)
  • Stop defining __cached__ for Python 3.15 (#28476)
  • [pyupgrade] Stop recommending removed typing.no_type_check_decorator (UP035) (#28475)

Performance

  • Reuse parser name lookups when interning (#28399)
  • Speed up inherited configuration resolution (#28299)

Documentation

  • Fix line-length path in --config example (#28392)
  • Remove the "Who’s Using Ruff?" list (#28455)

Other changes

  • Embed archive checksums in the shell installer (#28281)

Contributors

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.7

Released on 2026-09-10.

Preview features

  • [ruff] Add rule for default values on method receivers (RUF077) (#26700)
  • [ruff] Recognize re.prefixmatch (RUF039, RUF055) (#28311)

Bug fixes

  • Alternate nested quotes inside format spec interpolations (#28259)
  • [flake8-implicit-str-concat] Mark fix unsafe when it creates a docstring (ISC003) (#27981)
  • [flake8-tidy-imports] Skip fixes for multi-member imports (TID254) (#26584)
  • [pylint] Gate ImportCycleError on Python 3.15 (PLW0133) (#28310)

Rule changes

  • Correct D211 and D203 rule conflict diagnostic (#28444)
  • Recognize slice and frozendict generics (#28477)
  • Stop defining __cached__ for Python 3.15 (#28476)
  • [pyupgrade] Stop recommending removed typing.no_type_check_decorator (UP035) (#28475)

Performance

  • Reuse parser name lookups when interning (#28399)
  • Speed up inherited configuration resolution (#28299)

Documentation

  • Fix line-length path in --config example (#28392)
  • Remove the "Who’s Using Ruff?" list (#28455)

Other changes

  • Embed archive checksums in the shell installer (#28281)

Contributors

... (truncated)

Commits

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@dependabot
deps(python): bump the python-minor group with 3 updates
743d718 
Bumps the python-minor group with 3 updates: [numpy](https://github.com/numpy/numpy), [alembic](https://github.com/sqlalchemy/alembic) and [ruff](https://github.com/astral-sh/ruff).


Updates `numpy` from 2.5.2 to 2.5.3
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.5.2...v2.5.3)

Updates `alembic` from 1.19.1 to 1.19.2
- [Release notes](https://github.com/sqlalchemy/alembic/releases)
- [Changelog](https://github.com/sqlalchemy/alembic/blob/main/CHANGES)
- [Commits](https://github.com/sqlalchemy/alembic/commits)

Updates `ruff` from 0.16.6 to 0.16.7
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.16.6...0.16.7)

---
updated-dependencies:
- dependency-name: numpy
  dependency-version: 2.5.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-minor
- dependency-name: alembic
  dependency-version: 1.19.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-minor
- dependency-name: ruff
  dependency-version: 0.16.7
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Dependency updates python Python dependencies labels Sep 14, 2026
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