St/queries to snakemake - #85

Draft

thompson318 wants to merge 31 commits into

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st/queries-to-snakemake

Commits on Feb 2, 2026

first query for flow sheets
skeating
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820840d

Commits on Feb 4, 2026

building up scripts
skeating
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fb3d6da

Commits on Feb 19, 2026

adding more files
skeating
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8476351

Commits on Aug 5, 2026

Merge branch 'dev' into sk/queries
skeating
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47240ff

Commits on Aug 9, 2026

Add and refine SQL scripts for EHR data extraction
skeating
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3961143

Commits on Aug 11, 2026

Started on functions to wrap snakemake around sql calls
thompson318
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cdec5ca

Commits on Aug 12, 2026

Started to implement caboodle look up code
thompson318
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9897259
Moved airway sql to sql directory
thompson318
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1f2cfbe
Setting up config and docker bits
thompson318
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bd72361

Commits on Aug 18, 2026

Caboodle setup goes into exporter.env
thompson318
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33e2c08
Format fix
thompson318
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9b291cb
Beginning of test for ehr integration
thompson318
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d4fde59
SQL formatting
thompson318
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d910831
Merge branch 'dev' into st/queries-to-snakemake
thompson318
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654db91
Test with ehr lookup
thompson318
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e8f29a7
use caboodle testing
thompson318
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86d5dea
Trying to test ehr and hash lookup with ftps
thompson318
committed
7fbcfc0

Commits on Aug 19, 2026

Commits on Aug 20, 2026