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The Jackson Laboratory

The Jackson Laboratory: Leading the search for tomorrow's cures.

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  1. SVE SVE Public

    Python 51 11

  2. ezomero ezomero Public

    A module with convenience functions for writing Python code that interacts with OMERO.

    Python 47 17

  3. Picky Picky Public

    Structural Variants Pipeline for Long Reads

    Perl 45 6

  4. LIRICAL LIRICAL Public

    LIkelihood Ratio Interpretation of Clinical AbnormaLities

    Java 44 15

  5. zarrdataset zarrdataset Public

    A dataset for loading zarr files to be used in machine learning training pipelines

    Python 37 4

  6. JAXBD2K-ShortCourse JAXBD2K-ShortCourse Public

    This repository contains course materials from JAX-BD2K workshop.

    Shell 33 6

Repositories

Showing 10 of 395 repositories
  • bioconnect-data-standards Public

    Developing a structured interface with Scientific Services for contributors to provide relevant metadata about submitted samples

    TheJacksonLaboratory/bioconnect-data-standards's past year of commit activity
    2 MIT 0 6 0 Updated Jul 24, 2026
  • STQ Public

    Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images

    TheJacksonLaboratory/STQ's past year of commit activity
    Python 27 MIT 4 2 0 Updated Jul 24, 2026
  • sci-image-visualizer Public

    Browser-based scientific image visualization for Angular — OpenSeadragon (WSI), Plotly (2D/3D) and napari-js (WebGPU) rendering, region/annotation editing, and in-browser SAM segmentation. Extracted from jit-ui #80.

    TheJacksonLaboratory/sci-image-visualizer's past year of commit activity
    TypeScript 3 MIT 0 0 0 Updated Jul 24, 2026
  • hpo-web Public

    a web application to search and navigate the Human Phenotype Ontology (HPO)

    TheJacksonLaboratory/hpo-web's past year of commit activity
    HTML 15 13 12 1 Updated Jul 23, 2026
  • jds-ui-toolkit Public

    The JAX UI Toolkit workspace is a development environment engineered to streamline the creation, testing and deployment of shared UI components and packages across the JAX Data Science ecosystem.

    TheJacksonLaboratory/jds-ui-toolkit's past year of commit activity
    TypeScript 1 MIT 0 0 2 Updated Jul 23, 2026
  • endometriosis-visium-hd Public

    Analysis of Visium HD endometriosis data from the Courtois Lab at JAX.

    TheJacksonLaboratory/endometriosis-visium-hd's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 23, 2026
  • DIANNE Public

    Interactive image annotator of spatial differential attributes

    TheJacksonLaboratory/DIANNE's past year of commit activity
    Python 1 1 1 0 Updated Jul 21, 2026
  • image-processing-ia Public Forked from datacarpentry/image-processing

    Image Processing with Python

    TheJacksonLaboratory/image-processing-ia's past year of commit activity
    HTML 0 128 0 0 Updated Jul 21, 2026
  • mTOR Public

    This is a repository for code used in the manuscript titled "mTOR Signaling is a Key Modifier and Therapeutic Target in a Mouse Model of X-linked Alport Syndrome"

    TheJacksonLaboratory/mTOR's past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 20, 2026
  • pylmm3 Public

    A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.

    TheJacksonLaboratory/pylmm3's past year of commit activity
    Python 1 AGPL-3.0 0 0 0 Updated Jul 11, 2026
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