Issues

• Error in get_dbs_context(): There should not be any variants with multiple alternative alleles.

  UMCUGenetics/MutationalPatterns#89 · Filter by author anabbi opened on Jan 8, 2025

• Update Frequency of the MutationalPatterns Database

  UMCUGenetics/MutationalPatterns#88 · Filter by author mullerbsf opened on Nov 7, 2024

• problem with get_mut_type(data, type = "dbs", predefined_dbs_mbs = FALSE)

  UMCUGenetics/MutationalPatterns#87 · Filter by author riccardobergamin opened on Jan 24, 2024

• count_dbs_contexts() error

  UMCUGenetics/MutationalPatterns#86 · Filter by author ThomasGro opened on Dec 4, 2023
  1

• Expected number of INDELs using genomic_distribution

  UMCUGenetics/MutationalPatterns#85 · Filter by author cutleraging opened on Nov 29, 2023
  3

• easyrun error:

  UMCUGenetics/MutationalPatterns#83 · Filter by author asmo2a opened on Apr 11, 2023
  1

• GenomeInfoDb::seqlevelsStyle(gr) <- GenomeInfoDb::seqlevelsStyle(genome)

  UMCUGenetics/MutationalPatterns#82 · Filter by author annecarolm opened on Feb 24, 2023
  1

• Mutation matrix as input instead of vcf files

  UMCUGenetics/MutationalPatterns#80 · Filter by author tc86 opened on Nov 16, 2022
  1

• Error with "read_vcfs_as_granges" function

  UMCUGenetics/MutationalPatterns#79 · Filter by author shaghayeghsoudi opened on Oct 26, 2022
  1

• How to obtain the SNVs belong to a typical mutational signature

  UMCUGenetics/MutationalPatterns#77 · Filter by author Liyang-Zhang opened on Aug 23, 2022
  2

• How to use MuationalPatterns (or if I can) with Copy number signatures

  UMCUGenetics/MutationalPatterns#76 · Filter by author ipstone opened on Jul 13, 2022
  2

• Use extracted signature along with SBS

  UMCUGenetics/MutationalPatterns#75 · Filter by author mcdoz2010 opened on Jul 11, 2022
  4

• Allow Parallel Processing Utilising BiocParallel

  enhancement
  UMCUGenetics/MutationalPatterns#73 · Filter by author DarioS opened on May 4, 2022
  1

• Duplicate variants

  UMCUGenetics/MutationalPatterns#66 · Filter by author mcdoz2010 opened on Aug 4, 2021
  13

• How to perform the mutational pattern analyses based on maf file or tab delimited MAF file

  UMCUGenetics/MutationalPatterns#59 · Filter by author lincj1994 opened on Mar 21, 2021
  1