docker-imgs

A repository to store all the docker images used in flowcraft

Name		Name	Last commit message	Last commit date
Latest commit History 113 Commits
abricate		abricate
abyss		abyss
bandage		bandage
bowtie2_samtools		bowtie2_samtools
bowtie_dengue		bowtie_dengue
bracken		bracken
bwa_samtools		bwa_samtools
card_rgi		card_rgi
checkm		checkm
concoct		concoct
cutadapt		cutadapt
dengue_typing		dengue_typing
diamond		diamond
fast_ani		fast_ani
fastqc		fastqc
flowcraft_base		flowcraft_base
getseqena		getseqena
integrity_coverage		integrity_coverage
kraken		kraken
kraken2		kraken2
krona		krona
mafft		mafft
mapping_patlas		mapping_patlas
mash_patlas		mash_patlas
mauve		mauve
maxbin2		maxbin2
megahit		megahit
metabat2		metabat2
metamlst		metamlst
metaphlan		metaphlan
metaprob		metaprob
midas_species		midas_species
mlst		mlst
momps		momps
patho_typing		patho_typing
pilon		pilon
plasmidpredictor		plasmidpredictor
plotly		plotly
prinseq		prinseq
prokka		prokka
pyani		pyani
raxml		raxml
rematch		rematch
remove_host		remove_host
sample_fastq		sample_fastq
seq_typing		seq_typing
seqtk		seqtk
skesa		skesa
spades-conda		spades-conda
spades		spades
sra-tools		sra-tools
trimmomatic		trimmomatic
true_coverage		true_coverage
vamb		vamb
viral_assembly		viral_assembly
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md

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