Use adaptive hmc - #779

Draft

njtierney wants to merge 57 commits into

greta-dev:mainfrom

njtierney:adaptive-hmc-v3-i765

Commits on Mar 11, 2025

Commits on Mar 17, 2025

Use `max_leapfrog_steps` not `Lmin` in a test of adaptive_hmc
njtierney
committed
1c8f494

Commits on Mar 18, 2025

update adaptive hmc tests to correctly capture errors - these will not pass currently but this test driven development will be useful.
njtierney
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015e3d5
Tidying up adaptive_hmc some:
njtierney
committed
a6b13d6

Commits on Mar 19, 2025

Commits on Mar 20, 2025

Commits on Mar 21, 2025

Commits on Mar 24, 2025

Commits on Mar 25, 2025

make the geweke tests less stochastic
goldingn
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ad01052
undo sampling_results edits
goldingn
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9ca2f9b
increase adaptive HMC geweke warmup and sampling
goldingn
committed
5337f83

Commits on Mar 26, 2025

Commits on Mar 27, 2025

first pass at HMC sampler warmup message
njtierney
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193763a
add warmup info for adaptive hmc
njtierney
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417849b

Commits on Apr 24, 2025

Commits on Apr 29, 2025

tweak GH action
njtierney
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5227b52
try out the geweke test script
njtierney
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6ce96e3
Try out getting the Geweke test to run
njtierney
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1703180
fix typo
njtierney
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6d6b7d7
oops, push code for GHA to run
njtierney
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681bd73
upload plot onto action
njtierney
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f6fe8ba
use v4 artifact
njtierney
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764393e
update to upload the actual qq plot
njtierney
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89bd4bc
up the number of samples a lot
njtierney
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e855010

Commits on Apr 30, 2025

get geweke timeout to be 6 hours
njtierney
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03af6dc

Commits on May 7, 2025

try getting slice sampler to run on GHA
njtierney
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e1348b0
use slice stat name
njtierney
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f36a26a
tweak for slice sampler
njtierney
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968a347
add AHMC and Slice sampling to GHA
njtierney
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811e6c0
update geweke tests to bake in the metadata into the filenames. try for all four samplers
njtierney
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618215b
make sure GHA run the correct tests, and give the artifacts a better name
njtierney
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3e6b787
try running each of the samplers for a similar amount of time except for ahmc
njtierney
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bbf97f2
try with 250 - half as many iterations
njtierney
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3cbc13b
only run these runners when their relevant files change...which is now, but still
njtierney
committed
925cbcf

Commits on May 13, 2025

use 10 chains for HMC geweke test
njtierney
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4cc989f