Skip to content

Convenience methods for signed distance transform #72

Description

@hanslovsky

With the newly introduced binary distance transform methods (#69, #71), we can now very easily create a signed distance transform (beware: Kotlin!):

private fun <B: BooleanType<B>, T: RealType<T>> signedDistanceTransform(
		mask: RandomAccessibleInterval<B>,
		distanceOutside: RandomAccessibleInterval<T>,
		distanceInside: RandomAccessibleInterval<T>,
		vararg weights: Double = doubleArrayOf(1.0),
		distanceType: DistanceTransform.DISTANCE_TYPE = DistanceTransform.DISTANCE_TYPE.EUCLIDIAN
): RandomAccessibleInterval<T> {
	DistanceTransform.binaryTransform(mask, distanceOutside, distanceType, *weights)
	DistanceTransform.binaryTransform(not(mask), distanceInside, distanceType, *weights)
	val paired= Views.interval(Views.pair(distanceOutside, distanceInside), mask)
	return difference(paired)

}

with helper methods

fun <B: BooleanType<B>> not(mask: RandomAccessibleInterval<B>): RandomAccessibleInterval<B>
{
	return Converters.convert(mask, { s,t -> t.set(!s.get()) }, Util.getTypeFromInterval(mask).createVariable())!!
}

fun<T: RealType<T>> difference(pairs: RandomAccessibleInterval<Pair<T, T>>): RandomAccessibleInterval<T> {
	return Converters.convert(
			pairs,
			{ s,t -> t.set(s.a); t.sub(s.b) },
			Util.getTypeFromInterval(pairs).a.createVariable())!!
}

This will be negative inside the object defined by mask and positive everywhere else.

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions