Building reproducible tools for biological data and human-health research.
I work at the intersection of neuroscience, data science, and software engineering. My focus is turning complex experimental data into analysis pipelines that are understandable, testable, and useful to researchers.
I care about:
- quantitative models that make assumptions explicit;
- reliable workflows for high-dimensional and time-series data;
- validation that respects the experimental design; and
- documentation that makes research software easier to trust and reuse.
Languages & analysis
Python · SQL · NumPy · pandas · SciPy · scikit-learn
Scientific computing
Neural time series · electrophysiology · behavioral data · statistical modeling
· reproducible research
Engineering
Data validation · nested cross-validation · testing · command-line tools ·
technical documentation
- neural population dynamics and electrophysiology;
- interpretable machine learning for biomedical datasets;
- adaptive and closed-loop modeling of biological systems; and
- better interfaces between scientific analysis and usable software.
- Latent-period epileptogenesis via Markov modeling — hidden-Markov modeling of larval-zebrafish LFP after traumatic brain injury.
- Behavioral PTE — visual-habituation kinetics as a candidate predictor of later seizure-like activity.
- Decision geometry (IBL Brain-Wide Map) — population decoding and cross-temporal dynamics in real IBL Neuropixels recordings.
- CoRe-TBI — within-animal counterfactual recovery modeling of movement after traumatic brain injury.
- Lean Proof Diagnostics Explorer — transparent failure analysis of Lean proof-attempt logs.
- Autoformalization and iterative proof repair — a Lean generation/verification loop with language-model proof repair.
- Gravitational-wave inference engine — a dependency-light gravitational-wave inference teaching pipeline.
- Astro transient pipeline — simulated multi-messenger transient triage, from alert stream to follow-up queue.
- Planetary autonomy sim — seeded terrain generation and cost-based rover route planning.
- Multilayer perceptron from scratch — a NumPy-only MLP with backpropagation, calibration metrics, and tests.
- PharmaBlast — physics-informed modeling of fluorescence-based detection of pharmaceutical-laden microplastics in water.
Question → measurable endpoint → leakage-safe analysis → reproducible result
I prefer small, well-tested analytical steps over opaque complexity. When a model is not supported by the data, I document that limitation clearly and use it to guide the next experiment.
If you are working on computational neuroscience, biomedical data, or research software, I would be glad to connect.