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Hyperioning
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@BioSymphony

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jvogan/README.md

My repositories map

BioTools

  • Motif — a molecular biology workbench for Claude Science
  • BioVoice — talk to your protein structures: voice control for PyMOL, ChimeraX, and more
  • Proteus — structural biology automation: publication-quality figures, movies, and analysis

Orchestration & Agent Infra

  • A Fable of Codexes — turn Claude Code into a conductor over Codex workers
  • Symphony Linear Starter — give your agent worker teams that plan waves, review, and merge through Linear
  • Symphony Claude Lane — run Claude Code workers alongside Codex in Symphony + Linear workflows
  • NeoCloud Bridge — give your agent guarded cloud workers: artifact proof, cost limits, and cleanup
  • Telegram Codex Bridge — talk to your Codex Desktop session remotely: text, voice, and files over Telegram

BioSymphony

  • Structure Factory — structural biology workflows: design binders, screen candidates, prepare cloud runs
  • Small Molecules — small-molecule design workflows: plan synthesis, dock ligands, check ADMET, and more
  • GeneCluster — genome mining for natural products: search public genomes, compare candidate clusters
  • BioProspector — biosynthetic route exploration: find enzyme and gene candidates for target molecules
  • CryoCore — cryo-EM workflows: build maps and models, compare states, make figures
  • Ferm DoE — closed-loop fermentation runs: design a batch, analyze results, plan the next

Agent Skills

  • Daneel — give your agent a Telegram/Discord chatbot only people you approve can talk to
  • yt-agent — give your agent terminal YouTube search, download, and clip tooling
  • Valar — give your agent a voice: unlimited local TTS, ASR, and MCP bridge for Apple Silicon
  • WhisperHUD — give your agent fast local transcription, or system-wide voice-to-text for macOS

Research

  • VibeThinker-3B J Lens — a Jacobian lens for VibeThinker-3B: watch an answer take shape layer by layer

jvogan.github.io · BioSymphony · Motif · Hugging Face · X · houseofvogan.com

Pinned Loading

  1. symphony-linear-starter symphony-linear-starter Public

    Agent skill for running Codex or Claude Code as an orchestrator over Symphony workers and Linear issues. Plans waves, dispatches workers, reviews and merges, and optionally pursues a goal across ma…

    Python 15 1

  2. symphony-claude-lane symphony-claude-lane Public

    Long-horizon multi-agent orchestration for Claude Code workers. Mix and match with Codex workers via Symphony, tracked through Linear. An optional goal layer pursues durable goals across many waves.

    Shell 2

  3. ai-chatbot-daneel ai-chatbot-daneel Public

    A skill for AI coding agents that scaffolds a multi-model chatbot for Telegram or Discord. Supports Claude, GPT, Gemini, and OpenAI-compatible backends. Only approved users can reach it, with promp…

    Python

  4. Valar Valar Public

    Give your AI agent a voice. Local speech stack for Apple Silicon: TTS, ASR, forced alignment, voices, daemon, and MCP bridge.

    Swift 1

  5. telegram-codex-bridge telegram-codex-bridge Public

    Local-first bridge that connects your OpenAI Codex Desktop session to a Telegram bot. Talk to your coding agent from anywhere — text, files, voice notes, and optional live realtime calls.

    TypeScript 1

  6. biovoice biovoice Public

    Talk to your protein structures. Voice control for PyMOL, ChimeraX, AlphaFold, and Rosetta built on the OpenAI Realtime API with structured tool calling.

    TypeScript