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Mixed single- and two-population statistics crash under missing_data='exclude'

Status: Open.

#208 In kr-colab/pg_gpu;

· andrewkern opened on Aug 24, 2026

Windowed Garud H requests a 109 GB allocation at cohort-scale haplotype counts

Status: Open.

#207 In kr-colab/pg_gpu;

· andrewkern opened on Aug 24, 2026

Per-allele scalar path is ~17x slower than collapsed counting on biallelic data

Status: Open.

#206 In kr-colab/pg_gpu;

· andrewkern opened on Aug 24, 2026

Engines disagree on the undefined-FST sentinel and on single-population columns in mixed requests

Status: Open.

#200 In kr-colab/pg_gpu;

· andrewkern opened on Aug 23, 2026

Windowed da and scalar da disagree at sites one population is missing entirely

Status: Open.

#199 In kr-colab/pg_gpu;

· andrewkern opened on Aug 23, 2026

examples.rst passes per-allele ihs scores into a 1-D standardizer

Status: Open.

#197 In kr-colab/pg_gpu;

· andrewkern opened on Aug 22, 2026

locate_unlinked syncs to the host once per sliding window

Status: Open.

#196 In kr-colab/pg_gpu;

· andrewkern opened on Aug 22, 2026

check_diploid_encoding allocates several times the genotype block on the host

Status: Open.

#195 In kr-colab/pg_gpu;

· andrewkern opened on Aug 22, 2026

Eager zarr readers copy the genotype block twice

Status: Open.

#194 In kr-colab/pg_gpu;

· andrewkern opened on Aug 22, 2026

from_ts pairs haplotype rows by sample order rather than by individual

Status: Open.

#192 In kr-colab/pg_gpu;

· andrewkern opened on Aug 20, 2026

implementing --wagh flag for xp-ehh calculation

enhancementNew feature or requestNew feature or request

Status: Open.

#190 In kr-colab/pg_gpu;

· hmsnell opened on Aug 18, 2026

Weir-Cockerham has no shared per-site decomposition, so the scatter engine cannot compute fst_wc

Status: Open.

#187 In kr-colab/pg_gpu;

· andrewkern opened on Aug 17, 2026