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build(deps): bump the python-minor-and-patch group with 8 updates - #277

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Nov 5, 2026
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build(deps): bump the python-minor-and-patch group with 8 updates#277
mwyau merged 1 commit into
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dependabot/uv/python-minor-and-patch-2f41ea69f7

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@dependabot dependabot Bot commented on behalf of github Nov 5, 2026

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Bumps the python-minor-and-patch group with 8 updates:

Package From To
h5netcdf 1.8.1 1.8.2
numba 0.68.0 0.68.1
pytest 9.1.1 9.2.0
mypy 2.4.0 2.4.1
prek 0.5.7 0.5.9
ruff 0.17.2 0.17.3
ty 0.0.92 0.0.95
jupyterlab 4.6.4 4.6.5

Updates h5netcdf from 1.8.1 to 1.8.2

Release notes

Sourced from h5netcdf's releases.

release 1.8.2

What's Changed

New Contributors

Full Changelog: h5netcdf/h5netcdf@v1.8.1...v1.8.2

Changelog

Sourced from h5netcdf's changelog.

Change Log

Version 1.8.2 (October 27th, 2026):

  • Fix negative indexing of partially written variables to use the full shared dimension, including unwritten fill values (:pull:329) by Anton Soloviev <https://github.com/antonsoo>_
  • Fix CI issues with xarray nightly tests (add pytz dependency) and h5pyd tests (pin setuptools=81) (:issue:312, :pull:313) by Kai Mühlbauer <https://github.com/kmuehlbauer>_
  • FIX CI wrt setup-micromamba v3, update ros3 tests to work with HDF v2 (:pull:316) by Kai Mühlbauer <https://github.com/kmuehlbauer>_
  • Use netcdf4 instead of netCDF4 for conda-based installations (:pull:318) by Kai Mühlbauer <https://github.com/kmuehlbauer>_
  • Add HDF5 V2.2 tests to CI test matrix (:pull:323) by Kai Mühlbauer <https://github.com/kmuehlbauer>_
  • Update h5pyd>=1.0.0, hsds>=1.0.0, fix code and tests, xfail remaining h5pyd/hsds tests with issues reported to h5pyd, update CI (:pull:328) by Kai Mühlbauer <https://github.com/kmuehlbauer>_
  • Update pyfive>=1.2.0, pin pyfive>=1.3.0 in CI, remove pyfive from numpy 1 CI runs, use decode_strings=True (:pull:331) by Kai Mühlbauer <https://github.com/kmuehlbauer>_
  • Honor the requested byte order in legacy createVariable when the NumPy dtype already specifies a byte order (:pull:330) by Anton Soloviev <https://github.com/antonsoo>_
  • Update contributors, add AI disclosure, condense project history (:pull:332) by Kai Mühlbauer <https://github.com/kmuehlbauer>_

Version 1.8.1 (January 23rd, 2026):

  • Add numpy to default dependencies, update install section to highlight backend installation, update error message on missing backend (:issue:310, :pull:311) by Kai Mühlbauer <https://github.com/kmuehlbauer>_

Version 1.8.0 (January 16st, 2026):

  • Fix ros3 test (:issue:295, :pull:296). By Ezequiel Cimadevilla Alvarez <https://github.com/zequihg50>_
  • Update pre-commit. By Kai Mühlbauer <https://github.com/kmuehlbauer>_
  • Fix h5py3 hdf5 1.10 CI run (:pull:303). By Kai Mühlbauer <https://github.com/kmuehlbauer>_
  • Support pyfive as an alternative backend ({pull}273). By Bryan Lawrence <https://github.com/bnlawrence>, David Hassell <https://github.com/davidhassell>, Valeriu Predoi <https://github.com/valeriupredoi>, Kai Mühlbauer <https://github.com/kmuehlbauer> and Stephan Hoyer <https://github.com/shoyer>_
  • Add support for filters() for Variables to match netCDF4 python API. By Mark Harfouche <https://github.com/hmaarrfk>_.

Version 1.7.3 (October 21st, 2025):

  • Fix indexing with empty arrays and lists (:pull:297). By Kai Mühlbauer <https://github.com/kmuehlbauer>_

Version 1.7.2 (October 17th, 2025):

  • Fix regression where format was requested from group instance instead of root. Simplify logic to check and raise CompatibilityError. (:issue:293, :pull:294). By Kai Mühlbauer <https://github.com/kmuehlbauer>

Version 1.7.1 (October 16th, 2025):

  • Fix regression where attributes with list of strings were written with h5py low-level API instead of high-level API (:issue:291, :pull:292). By Kai Mühlbauer <https://github.com/kmuehlbauer>_

... (truncated)

Commits

Updates numba from 0.68.0 to 0.68.1

Updates pytest from 9.1.1 to 9.2.0

Release notes

Sourced from pytest's releases.

9.2.0

pytest 9.2.0 (2026-10-27)

Removals and backward incompatible breaking changes

  • #14716: -c now raises a usage error for a path that does not exist, is a directory, or is in a format pytest has no loader for. Such paths were previously either ignored or reported as an unhandled FileNotFoundError.

  • #8593: The indirect, ids and scope arguments of Metafunc.parametrize() <pytest.Metafunc.parametrize> -- and therefore of @pytest.mark.parametrize <pytest.mark.parametrize ref> -- are now keyword-only.

    Passing them positionally was a common source of confusing errors, e.g. parametrize("arg1", "arg2", [(1, 2)]) made the argvalues land in indirect and failed with indirect fixture '(1, 2)' doesn't exist; such mistakes now fail with an understandable TypeError. The type annotations have always declared these arguments as keyword-only.

  • #993: Plugin import failures at startup are now reported and classified instead of escaping as a raw traceback with the accidental exit code 1:

    • a plugin that cannot be found -- via -p, pytest_plugins or PYTEST_PLUGINS -- exits with pytest.ExitCode USAGE_ERROR (4), like a conftest.py that fails to import;
    • a plugin that is found but raises while importing -- including a broken pytest11 entry point or a missing plugin dependency -- exits with pytest.ExitCode INTERNAL_ERROR (3), with the traceback preserved.

    pytest.main now returns these codes instead of raising ImportError. Also fixed an IndexError from pytest's own internals when the plugin raised an exception with no arguments.

Deprecations (removal in next major release)

  • #14742: The private _pytest.python.CallSpec2 name has been renamed to CallSpec. The old CallSpec2 alias remains available for now and will be removed in pytest 10 or 11.

  • #14755: Schedule yield_fixture decorator for removal in pytest 10 or 11.

  • #14774: Similarly to the deprecation of class-scoped fixtures defined as instance methods in pytest 9.1, all higher-scoped fixtures (module, package, and session) defined as instance methods are now deprecated.

    They suffer from the same issue the original deprecation only fixed for class-scoped fixtures, see 10819 and 14011.

  • #14808: Passing a non-string value to a string-typed ini option now emits a pytest.PytestRemovedIn10Warning. This affects [tool.pytest.ini_options] in pyproject.toml. In pytest 10 this will raise a TypeError, matching the behavior of the corresponding TOML config path.

  • #7323: Passing bytes to TerminalReporter.write_line() is now deprecated, pass a str instead.

New features

  • #14743: Full diff: now contains a legend explaining the + & - symbols in diff output.
  • #2781: When strict_markers is enabled, marker names used in -m expressions are now validated against registered markers.
  • #6881: Added the parametrize_long_str_id_strategy configuration option to control how long str/bytes parameter values are handled in auto-generated test IDs. Explicit IDs set via ids=[...] or pytest.param(..., id=...) are not affected. Available strategies: short (default, values over 100 chars fall back to argname+index), sha256 (SHA-256 hex digest), legacy (keep full value), and disallow (error requesting explicit IDs).

Improvements in existing functionality

  • #10745: A RecursionError whose recursion origin cannot be located now shows only the first and last 10 stack frames, matching what pytest already did when locating the origin failed outright. Previously the full traceback -- often around a thousand near-identical frames -- was rendered, which was both slow and unreadable. Pass --full-trace to see every frame.

... (truncated)

Commits
  • ae1d0ff Prepare release version 9.2.0
  • 143ce31 pre-commit: exclude codespell on generated release announcements
  • 532dc5f tox: add attrs dependency to regen, needed in reportingdemo.rst
  • a7b2446 Merge pull request #15245 from pytest-dev/claude/project-thread-9jcf91
  • 679d09c [pre-commit.ci] pre-commit autoupdate (#15266)
  • 41d12cd docs: clarify typing for yield fixtures
  • b9022ba Merge pull request #15182 from 1871698/docs/improve-getting-started-description
  • 16f87a7 docs: improve getting-started.rst test execution description
  • 082ed70 Merge pull request #15255 from pytest-dev/claude/project-thread-eoi3d6
  • ae37a01 Merge pull request #15227 from pytest-dev/claude/project-thread-4etye4
  • Additional commits viewable in compare view

Updates mypy from 2.4.0 to 2.4.1

Changelog

Sourced from mypy's changelog.

Mypy 2.4.1

  • Process overloads as a whole in two-phase type checking (Ivan Levkivskyi, PR 22231)
  • Skip recursive setup for frame-private nested functions in mypyc (Piotr Sawicki, PR 22187)

Acknowledgements

Thanks to all mypy contributors who contributed to this release:

  • A5rocks
  • Adam Dangoor
  • Alex Waygood
  • Ali Hamdan
  • Brian Helba
  • Chad Dombrova
  • David Foster
  • dnwpark
  • Edgar Ramírez Mondragón
  • Giorgos Michas
  • Ivan Levkivskyi
  • Jelle Zijlstra
  • Jukka Lehtosalo
  • Marc Mueller
  • Michael R. Crusoe
  • NIYONSHUTI Emmanuel
  • Piotr Sawicki
  • Shantanu
  • themylogin
  • Vaggelis Danias
  • Willy Bruns

I'd also like to thank my employer, Dropbox, for supporting mypy development.

Mypy 2.3

We've just uploaded mypy 2.3.0 to the Python Package Index (PyPI). Mypy is a static type checker for Python. This release includes new features, performance improvements and bug fixes. You can install it as follows:

python3 -m pip install -U mypy

You can read the full documentation for this release on Read the Docs.

The Upcoming Switch to the New Native Parser

We are planning to enable the new native parser (--native-parser) by default soon. We recommend that you test the native parser in your projects and report any issues in the mypy issue tracker.

Mypyc Free-threading Memory Safety

... (truncated)

Commits

Updates prek from 0.5.7 to 0.5.9

Release notes

Sourced from prek's releases.

0.5.9

Release Notes

Released on 2026-10-30.

Enhancements

  • Add normalize-indentation builtin hook (#2967)
  • Allow overriding the uv install version (#2923)
  • Embed dependency metadata in release binaries (#2976)
  • Select musl Bun builds when glibc is unavailable (#2972)

Performance

  • Improve workspace discovery performance (#2936)

Bug fixes

  • Preserve clean-filtered files during stashing (#2915)

Contributors

Install prek 0.5.9

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/j178/prek/releases/download/v0.5.9/prek-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://github.com/j178/prek/releases/download/v0.5.9/prek-installer.ps1 | iex"

Install prebuilt binaries via Homebrew

brew install prek

Download prek 0.5.9

File Platform Checksum
prek-aarch64-apple-darwin.tar.gz Apple Silicon macOS checksum

... (truncated)

Changelog

Sourced from prek's changelog.

0.5.9

Released on 2026-10-30.

Enhancements

  • Add normalize-indentation builtin hook (#2967)
  • Allow overriding the uv install version (#2923)
  • Embed dependency metadata in release binaries (#2976)
  • Select musl Bun builds when glibc is unavailable (#2972)

Performance

  • Improve workspace discovery performance (#2936)

Bug fixes

  • Preserve clean-filtered files during stashing (#2915)

Contributors

Commits

Updates ruff from 0.17.2 to 0.17.3

Release notes

Sourced from ruff's releases.

0.17.3

Release Notes

Released on 2026-10-26.

Preview features

  • [suspicious] Add shared-clock-mock (#29074)

Bug fixes

  • [pyupgrade] Avoid incorrect conversions to f-strings (UP032) (#25485)

Performance

  • Buffer stdout in ruff format (#29631)
  • Specialize ASCII identifier lexing (#29503)
  • Speed up identifier and keyword lexing (#29463)

Documentation

  • [flake8-bandit] Describe what the rule actually checks for httpx (S113) (#27936)

Contributors

Install ruff 0.17.3

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.17.3/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/ruff/releases/download/0.17.3/ruff-installer.ps1 | iex"

Download ruff 0.17.3

File Platform Checksum
ruff-aarch64-apple-darwin.tar.gz Apple Silicon macOS checksum
ruff-x86_64-apple-darwin.tar.gz Intel macOS checksum
ruff-aarch64-pc-windows-msvc.zip ARM64 Windows checksum

... (truncated)

Changelog

Sourced from ruff's changelog.

0.17.3

Released on 2026-10-26.

Preview features

  • [suspicious] Add shared-clock-mock (#29074)

Bug fixes

  • [pyupgrade] Avoid incorrect conversions to f-strings (UP032) (#25485)

Performance

  • Buffer stdout in ruff format (#29631)
  • Specialize ASCII identifier lexing (#29503)
  • Speed up identifier and keyword lexing (#29463)

Documentation

  • [flake8-bandit] Describe what the rule actually checks for httpx (S113) (#27936)

Contributors

Commits

Updates ty from 0.0.92 to 0.0.95

Release notes

Sourced from ty's releases.

0.0.95

Release Notes

Released on 2026-10-29.

Bug fixes

  • Accept another unpacked TypeVarTuple as a default (#29752)
  • Accept keyword arguments for TypeAliasType name and value (#29802)
  • Detect traversal budget exhaustion in products of lower bounds (#29679)
  • Fix recursive protocol materialization self-comparison (#29809)
  • Reject out-of-scope type variables in PEP 695 pack defaults (#29805)
  • Use a trailing ParamSpec default after a TypeVarTuple (#29755)

LSP server

  • Parenthesize assignment and generator expressions in argument hint edits (#29797)
  • Place argument name inlay hints before grouping parentheses (#29794)
  • Place variable type inlay hints after grouping parentheses (#29795)

Contributors

Install ty 0.0.95

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ty/releases/download/0.0.95/ty-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/ty/releases/download/0.0.95/ty-installer.ps1 | iex"

Download ty 0.0.95

File Platform Checksum
ty-aarch64-apple-darwin.tar.gz Apple Silicon macOS checksum
ty-x86_64-apple-darwin.tar.gz Intel macOS checksum
ty-aarch64-pc-windows-msvc.zip ARM64 Windows checksum
ty-i686-pc-windows-msvc.zip x86 Windows checksum
ty-x86_64-pc-windows-msvc.zip x64 Windows checksum
ty-aarch64-unknown-linux-gnu.tar.gz ARM64 Linux checksum

... (truncated)

Changelog

Sourced from ty's changelog.

0.0.95

Released on 2026-10-29.

Bug fixes

  • Accept another unpacked TypeVarTuple as a default (#29752)
  • Accept keyword arguments for TypeAliasType name and value (#29802)
  • Detect traversal budget exhaustion in products of lower bounds (#29679)
  • Fix recursive protocol materialization self-comparison (#29809)
  • Reject out-of-scope type variables in PEP 695 pack defaults (#29805)
  • Use a trailing ParamSpec default after a TypeVarTuple (#29755)

LSP server

  • Parenthesize assignment and generator expressions in argument hint edits (#29797)
  • Place argument name inlay hints before grouping parentheses (#29794)
  • Place variable type inlay hints after grouping parentheses (#29795)

Contributors

0.0.94

Released on 2026-10-28.

Bug fixes

  • Correctly handle line continuation when fixing unused ignore comments (#29781)
  • Fix Linux x86-64 startup on older kernels (#4853)
  • Fix a panic when a comprehension filter depends on a later binding (#29786)
  • Fix a panic when sorting diagnostics without a source location (#29780)
  • Fix panic on a chained assignment with a missing value (#29787)
  • Reject defaulted TypeVars after a TypeVarTuple in legacy generic classes (#29753)

Other changes

  • Django: suppress invalid-override errors for Meta configurations (#29769)

Contributors

0.0.93

... (truncated)

Commits

Updates jupyterlab from 4.6.4 to 4.6.5

Release notes

Sourced from jupyterlab's releases.

v4.6.5

4.6.5

(Full Changelog)

Bugs fixed

Maintenance and upkeep improvements

Documentation improvements

... (truncated)

Commits
  • 9ba8903 [ci skip] Publish 4.6.5
  • 9f5590d Backport PR #20298 on branch 4.6.x (Restrict path suggestions to the file dia...
  • f194653 Backport PR #20023 on branch 4.6.x (Fix find in the JSON viewer) (#20313)
  • 28a069d Backport PR #20310 on branch 4.6.x (Fix editor rulers drawn at the wrong colu...
  • 0a907bd Backport PR #20302 on branch 4.6.x (Upgrade @​codemirror/view to 6.43.15, fixi...
  • 25b26ea Backport PR #20305 on branch 4.6.x (Fix "New Python File" appearing twice in ...
  • e7ace7b Backport PR #20285 on branch 4.6.x (Fix React toolbar items flickering when t...
  • 1ba680b Backport PR #19257 on branch 4.6.x (Brighten mirror-editor attribute color in...
  • 30709cd Backport PR #19951 on branch 4.6.x (Stabilize notebook execution and memory l...
  • 168cfeb Backport PR #19983 on branch 4.6.x (Bump dompurify from 3.4.13 to 3.4.16) (#2...
  • Additional commits viewable in compare view

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@dependabot
build(deps): bump the python-minor-and-patch group with 8 updates
ff31227 
Bumps the python-minor-and-patch group with 8 updates:

| Package | From | To |
| --- | --- | --- |
| [h5netcdf](https://github.com/h5netcdf/h5netcdf) | `1.8.1` | `1.8.2` |
| [numba](https://numba.pydata.org) | `0.68.0` | `0.68.1` |
| [pytest](https://github.com/pytest-dev/pytest) | `9.1.1` | `9.2.0` |
| [mypy](https://github.com/python/mypy) | `2.4.0` | `2.4.1` |
| [prek](https://github.com/j178/prek) | `0.5.7` | `0.5.9` |
| [ruff](https://github.com/astral-sh/ruff) | `0.17.2` | `0.17.3` |
| [ty](https://github.com/astral-sh/ty) | `0.0.92` | `0.0.95` |
| [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.6.4` | `4.6.5` |


Updates `h5netcdf` from 1.8.1 to 1.8.2
- [Release notes](https://github.com/h5netcdf/h5netcdf/releases)
- [Changelog](https://github.com/h5netcdf/h5netcdf/blob/main/CHANGELOG.rst)
- [Commits](h5netcdf/h5netcdf@v1.8.1...v1.8.2)

Updates `numba` from 0.68.0 to 0.68.1

Updates `pytest` from 9.1.1 to 9.2.0
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@9.1.1...9.2.0)

Updates `mypy` from 2.4.0 to 2.4.1
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v2.4.0...v2.4.1)

Updates `prek` from 0.5.7 to 0.5.9
- [Release notes](https://github.com/j178/prek/releases)
- [Changelog](https://github.com/j178/prek/blob/main/CHANGELOG.md)
- [Commits](j178/prek@v0.5.7...v0.5.9)

Updates `ruff` from 0.17.2 to 0.17.3
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.17.2...0.17.3)

Updates `ty` from 0.0.92 to 0.0.95
- [Release notes](https://github.com/astral-sh/ty/releases)
- [Changelog](https://github.com/astral-sh/ty/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ty@0.0.92...0.0.95)

Updates `jupyterlab` from 4.6.4 to 4.6.5
- [Release notes](https://github.com/jupyterlab/jupyterlab/releases)
- [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md)
- [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.6.4...@jupyterlab/lsp@4.6.5)

---
updated-dependencies:
- dependency-name: h5netcdf
  dependency-version: 1.8.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-minor-and-patch
- dependency-name: numba
  dependency-version: 0.68.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-minor-and-patch
- dependency-name: pytest
  dependency-version: 9.2.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: mypy
  dependency-version: 2.4.1
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-minor-and-patch
- dependency-name: prek
  dependency-version: 0.5.9
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-minor-and-patch
- dependency-name: ruff
  dependency-version: 0.17.3
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-minor-and-patch
- dependency-name: ty
  dependency-version: 0.0.95
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-minor-and-patch
- dependency-name: jupyterlab
  dependency-version: 4.6.5
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-minor-and-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Nov 5, 2026
@mwyau
mwyau merged commit 75776c8 into main Nov 5, 2026
23 checks passed
@mwyau
mwyau deleted the dependabot/uv/python-minor-and-patch-2f41ea69f7 branch November 5, 2026 17:52
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