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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 408

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 279 137

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 312 172

Repositories

Showing 10 of 104 repositories
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox's past year of commit activity
    Python 50 MIT 22 19 8 Updated Sep 21, 2026
  • status Public

    Nextstrain status pages

    nextstrain/status's past year of commit activity
    JavaScript 1 MIT 1 5 0 Updated Sep 21, 2026
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu's past year of commit activity
    Python 29 11 18 5 Updated Sep 21, 2026
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu's past year of commit activity
    Python 65 34 27 9 Updated Sep 21, 2026
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice's past year of commit activity
    JavaScript 312 AGPL-3.0 172 250 (4 issues need help) 40 Updated Sep 21, 2026
  • ebola Public

    Nextstrain build for Ebola virus

    nextstrain/ebola's past year of commit activity
    Python 6 10 9 1 Updated Sep 20, 2026
  • measles Public

    Nextstrain build for measles virus

    nextstrain/measles's past year of commit activity
    Python 4 9 7 3 Updated Sep 18, 2026
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur's past year of commit activity
    Python 279 AGPL-3.0 137 230 (1 issue needs help) 39 Updated Sep 18, 2026
  • rsv Public

    Workflow for RSV analyses on Nextstrain.org

    nextstrain/rsv's past year of commit activity
    Python 11 7 10 4 Updated Sep 18, 2026
  • newcastle-disease-virus Public
    nextstrain/newcastle-disease-virus's past year of commit activity
    Python 0 0 0 0 Updated Sep 18, 2026
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