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Add support for generating mmseqs taxonomy reports #466
Description
Description of feature
Mmseqs has built-in support for generating some useful reports via the mmseqs taxonomyreport command. This is described in the official wiki:
https://github.com/soedinglab/mmseqs2/wiki#taxonomy-report-in-kraken-or-krona-style
It would be great to have this functionally enabled in nf-core/funcscan. It would require the creation of an additional nf-core module called MMSEQS_TAXONOMYREPORT.
Activity
jfy133 commentedon Mar 23, 2025
What do you think @jasmezz @Darcy220606 ?
Darcy220606 commentedon Mar 25, 2025
Visualization is always a nice add on feature 💥 We already use
createtsvand publish the output table for mmseqs taxonomy classification. So creating this module should not be an issue if this is requested. Could also be integrated in the GUI downstream...