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Pull requests: nf-core/modules

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Pull requests list

New module: sourmash/pairwise
#12456 opened Jul 28, 2026 by worthyc51 Loading…
14 of 17 tasks
1
2
Add optional filter file as input in rclone/copy
#12455 opened Jul 28, 2026 by delfiterradas Contributor Loading…
17 tasks
1
@delfiterradas
1
docs(orfnormalise): correct the GTF contract for rpbp and price Ready for Review
#12453 opened Jul 28, 2026 by pinin4fjords Member Loading…
3
add hmmer/eslsfetch size/l
#12452 opened Jul 28, 2026 by vagkaratzas Contributor • Draft
1 of 17 tasks
2
fix(gedi): make the genome index self-contained and relocatable
#12451 opened Jul 28, 2026 by pinin4fjords Member Loading…
8 tasks done
1
Add a new module - gridss/extractoverlappingfragments
#12450 opened Jul 28, 2026 by imsarath Contributor • Draft
17 tasks
1
Update bcftools/consensus/main.nf
#12449 opened Jul 28, 2026 by unholyparrot Loading…
17 tasks
1
Swap tar to topics size/m
#12447 opened Jul 28, 2026 by SPPearce Contributor • Draft
Migrate narfmap/hashtable to topic channels
#12445 opened Jul 27, 2026 by xHaMMaDy Contributor Loading…
13 tasks done
1
3
fix(qualimap) Fix for errors in qualimap when memory is set to null
#12441 opened Jul 27, 2026 by bigbigdumdum Loading…
2 of 11 tasks
3
fix #12426 Ready for Review
#12427 opened Jul 24, 2026 by SimHolz Loading…
1
1
fmhfunprofiler: fix test data and update snapshot size/m
#12417 opened Jul 24, 2026 by nickp60 Contributor Loading…
12 of 17 tasks
1
6
Add new component: gridss/call Ready for Review
#12401 opened Jul 22, 2026 by imsarath Contributor Loading…
14 of 17 tasks
1
@imsarath
2
gtffilter: add support for non-Ensembl GTF files
#12393 opened Jul 21, 2026 by kanishkanandhkumar Loading…
3
Propr topics size/xl
#12387 opened Jul 20, 2026 by SPPearce Contributor • Draft
bismark/align: intra-instance -p threading (replace --multicore fork model for Bowtie 2 + HISAT2)
#12385 opened Jul 19, 2026 by FelixKrueger Contributor Loading…
3 tasks done
13
New module: angsd/dosaf
#12359 opened Jul 14, 2026 by ASendellPrice Contributor Loading…
12 of 14 tasks
1
@ASendellPrice
20
Fix strict syntax in utils_* subworkflows
#12329 opened Jul 9, 2026 by itrujnara Contributor Loading…
2 of 4 tasks
6
feat (closes #7246): add new component: leafcutter/differentialsplicing
#12271 opened Jul 7, 2026 by JTL-lab Contributor Loading…
14 of 17 tasks
1
9
Update to topic metaspace/*
#12247 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
2
Update to topic metamaps/*
#12246 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
6
new module: fastaguard awaiting-changes will be closed after 30 days
#12239 opened Jul 3, 2026 by ehsanestaji Contributor Loading…
14 of 15 tasks
18
Add new subworkflow: ubam_align_minimap2 Ready for Review
#12238 opened Jul 3, 2026 by manascripts Member Loading…
7 of 17 tasks
Update deacon module awaiting-changes will be closed after 30 days draft
#12236 opened Jul 3, 2026 by sofstam Contributor Loading…
17 tasks
Add subworkflow: fastq_align_minimap2 Ready for Review size/m
#12235 opened Jul 3, 2026 by manascripts Member Loading…
8 of 17 tasks
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