minor release v1.1.1 (template update and fastp update) - #267
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Install nf-core/chelae/trim module with patch for multiqc_files topic channel on json and metrics outputs. Add as an alternative to fastp for adapter trimming and quality filtering of short-read FASTQ data. Generated by opencode
Add chelae/trim as an alternate trimming tool
Back-merge the 4.0.3 security patch into dev
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 4.0.3. For more documentation on how to update your pipeline, please see the Synchronisation documentation. |
* update output docs with info about custom multiqc sections * run prettier
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maxulysse
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Aug 12, 2026
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LGTM, just waiting on TEMPLATE merge and prepare release PRs
* Template update for nf-core/tools version 4.0.0 * Template update for nf-core/tools version 4.0.1 * Template update for nf-core/tools version 4.0.2 * Template update for nf-core/tools version 4.0.3 * delet unnecessary files * update modules * update changelog * update snapshots * update fastp --------- Co-authored-by: FranBonath <franziska.bonath@scilifelab.se> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
nvnieuwk
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One small comment but LGTM otherwise
Co-authored-by: nf-core-bot <core@nf-co.re>
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).