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Okinawa Institute of Science & Technology

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  1. Usiigaci Usiigaci Public

    Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

    Jupyter Notebook 206 69

  2. LaTeX-templates LaTeX-templates Public

    Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal

    69 58

  3. optinist optinist Public

    calcium imaging pipeline tool

    TypeScript 50 16

  4. DenseObjectDetection DenseObjectDetection Public

    Detection of objects in an image using segmentation

    Python 38 15

  5. Physics-of-Behavior-Tutorials Physics-of-Behavior-Tutorials Public

    Jupyter Notebook 37 5

  6. DenseObjectAnnotation DenseObjectAnnotation Public

    Tool to annotate objects in images.

    JavaScript 21 8

Repositories

Showing 10 of 202 repositories
  • BioinfoUgrp_UnixGoodies_Images Public

    Singularity images with cool Unix tools to be exported as modules in HPC clusters

    oist/BioinfoUgrp_UnixGoodies_Images's past year of commit activity
    Dockerfile 3 0 1 0 Updated Sep 9, 2026
  • neuro-workflow Public
    oist/neuro-workflow's past year of commit activity
    Jupyter Notebook 17 7 8 9 Updated Sep 9, 2026
  • BioinfoUgrp Public

    OIST Bioinfo user group

    oist/BioinfoUgrp's past year of commit activity
    Shell 13 2 1 0 Updated Sep 9, 2026
  • AntsArray Public
    oist/AntsArray's past year of commit activity
    Python 1 0 0 0 Updated Sep 9, 2026
  • emevo Public

    Simluate Embodied Evolution of Agents

    oist/emevo's past year of commit activity
    Python 6 Apache-2.0 0 0 0 Updated Sep 9, 2026
  • SiamJEPA Public
    oist/SiamJEPA's past year of commit activity
    Python 5 0 0 0 Updated Sep 9, 2026
  • gecs Public Forked from igorsdub/gecs

    Good Enough Coding in Science teaches software development practices for scientific projects

    oist/gecs's past year of commit activity
    CSS 0 MIT 2 0 0 Updated Sep 9, 2026
  • LuscombeU_nfcore_pairgenomealign_fork Public Forked from nf-core/pairgenomealign

    Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results

    oist/LuscombeU_nfcore_pairgenomealign_fork's past year of commit activity
    Nextflow 0 MIT 8 0 0 Updated Sep 7, 2026
  • iSciComp Public

    JupyterBook: Introduction to Scientific Computation

    oist/iSciComp's past year of commit activity
    Jupyter Notebook 5 CC0-1.0 3 0 0 Updated Sep 6, 2026
  • subarashii-annotation-pipeline Public

    1007 genomes annotation pipeline

    oist/subarashii-annotation-pipeline's past year of commit activity
    Shell 0 0 0 0 Updated Sep 4, 2026
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