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samples-and-data
samples-and-data PublicImports your raw data — sequencing reads, count matrices, single-cell objects, tabular results — organizes it into named datasets, and attaches the sample metadata every downstream analysis groups …
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deprecated-clonotype-browser
deprecated-clonotype-browser PublicClonotype Browser Block
TypeScript 4
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mixcr-shm-trees
mixcr-shm-trees PublicBuild somatic hypermutation (SHM) lineage trees from antibody repertoire sequencing data. Reconstruct clonal relationships between antibody sequences and visualize how B-cell receptor (BCR) clones …
Vue 3
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deprecated-mixcr-clonotyping
deprecated-mixcr-clonotyping PublicMiXCR Clonotyping Block
TypeScript 2
Repositories
- feature-integration Public
Platforma block: per-cell feature/antigen assignment from feature-barcode reads (BEAM)
- clonotype-clustering Public
Groups similar sequences (clonotypes or peptides) into clusters based on similarity using MMseqs2.
- import-vdj-data Public
Imports V(D)J data from various formats, including MiXCR, immunoSeq, AiRR and more (bulk or single-cell) and normalizes them into one standard clonotype dataset that every downstream
- tcr-clustering-gliph2 Public
- antibody-tcr-lead-selection Public
Select and rank the most promising antibody, peptide, or TCR candidates from a discovery campaign
- antibody-sequence-liabilities Public
Screen antibody, TCR, and peptide sequences for developability liabilities — the motifs that cause deamidation, isomerization, fragmentation, unwanted glycosylation, oxidation, and cysteine problems.
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