GitHub - quinlan-lab/CIDR_preprocessing

NIH CEPH CIDR Preprocessing

Pipelines for joint-genotyping the CIDR samples alongside the original 3-generation CEPH pedigrees.

Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
profiles/cluster		profiles/cluster
rules		rules
.gitignore		.gitignore
README.md		README.md
concatenate_cidr_cram.sh		concatenate_cidr_cram.sh
config.yaml		config.yaml
create_sample_cram_map.py		create_sample_cram_map.py
create_sample_gvcf_map.py		create_sample_gvcf_map.py
genotype_gvcfs_from_genomics_db.smk		genotype_gvcfs_from_genomics_db.smk
make_provenance.py		make_provenance.py
realign.smk		realign.smk
samples_sequenced_thrice.txt		samples_sequenced_thrice.txt