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average-linkage

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Recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.

  • Updated Nov 25, 2024
  • Jupyter Notebook

R script for agglomerative hierarchical cluster analysis of bathymetric profiles: z-score scaling, Euclidean and correlation distance, average-linkage hclust, dendextend/magrittr dendrogram styling, tanglegram comparison and pvclust AU/BP bootstrap p-values. Mariana Trench; Lemenkova (2020), Carpathian JECE 13(1):5-12.

  • Updated Sep 12, 2026
  • R

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