bc5cdr

Here are 6 public repositories matching this topic...

ekkkkki / LLM-Replace-Annotators-in-Biomedical-Text-Mining

Prompts, datasets, and scripts for evaluating frontier LLMs as biomedical text-mining annotators, including instruction retrieval, two-step inference, and synthetic-data distillation.

pubmed information-extraction named-entity-recognition relation-extraction data-annotation synthetic-data biomedical-text-mining biobert model-distillation large-language-models llm prompt-engineering biomedical-nlp bc5cdr biored litcovid

Updated Jul 8, 2026
Python

SanyogSingh07 / Disease-GNN-Relation-Prediction

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Graph Neural Network (GraphSAGE) for Chemical-Disease Relation prediction on BioCreative BC5CDR dataset.

python machine-learning bioinformatics graphsage graph-neural-networks pytorch-geometric chemical-disease-relation bc5cdr

Updated Aug 17, 2026
Python

jeffwuu32 / biomed-llm-ner-repro

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Biomedical NER using LLMs

nlp pytorch information-extraction named-entity-recognition lora ner biomedical gemma model-evaluation fine-tuning peft huggingface-transformers llm biomedical-nlp bc5cdr gemma4 biored

Updated Sep 14, 2026
Jupyter Notebook

nagrajv10 / NER-for-Extracting-Diseases-and-Chemicals-from-Clinical-Literature

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NER system for extracting chemical and disease entities from clinical texts. Compares BioBERT, DeBERTa, and BiLSTM-CRF models on BC5CDR corpus with detailed performance analysis.

natural-language-processing named-entity-recognition bilstm-crf biobert huggingface deberta biomedical-nlp bc5cdr

Updated Feb 8, 2026
Jupyter Notebook

DVerma11 / reddit-anxiety-symptom-nlp-analysis

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Analysis of Reddit posts from r/Anxiety to explore symptoms, co-mentioned conditions, and emotional narratives using NLP methods. Modular Colab notebooks provided for reproducible research.