Bacteriophage discovery & characterization pipeline (Nextflow DSL2) — FastQC, Kraken2, SPAdes, VirSorter2, CheckV, BACPHLIP, Phrokka, Prokka, vContact2, vHULK, BLAST
Comparative viromics pipeline designed to profile gut viral communities in neurodysbiosis and control cohorts. Implements de novo MEGAHIT assembly, geNomad prediction, CheckV quality assessment, and Bowtie2 read recruitment to characterize gut bacteriophage signatures in humanized mouse models.
Staphylococcus aureus bakteriyofaj izolatlarinin assembly ve karakterizasyon ciktilari (metaviralSPAdes, CheckV, BACPHLIP, vContact2)
MetaNextViro: High-Throughput Virus Identification and Metagenomic Analysis Pipeline
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