cytomine

Cytomine-core-legacy is the main web server implementing the Cytomine API of the legacy edition

BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

A web platform for collaborative analysis of very large bio-medical images

Cytomine-Web-UI is the graphical user interface for Cytomine ULiège edition.

Client to interact with Cytomine API in Python. Our fork includes R&D experimental features. See @cytomine for official releases.

Scripts for use with BIOMERO

This repository hosts the Cytomine Community ULiège Legacy Edition. Our fork includes R&D experimental features. See @cytomine for official releases.

Dockerfiles used to compile Cytomine docker images. Our fork includes R&D experimental features. See @cytomine for official releases.

Client to communicate with Cytomine API in Java. Our fork includes R&D experimental features. See @cytomine for official releases.

Cytomine App Store

Cytomine ULiège Edition

This is a installation package of Cytomine_Python_Client-0.1.4 for python 3.6. The original one is just compatible with python 2.7, which can be cloned from https://github.com/cytomine/Cytomine-python-client

Integration of Stardist algorithm as a Cytomine task

Pull annotations and the corrosponding image patches from a Cytomine server.

Hyperspectral Management System

Client to interact with Cytomine API in Javascript. Our fork includes R&D experimental features. See @cytomine for official releases.

A BioFormats wrapper for Cytomine PIMS

Cytomine Core of ULiège edition.

Cytomine software for image classification with deep features (model builder)

Helm chart to deploy Cytomine on Kubernetes