Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
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Jun 7, 2022 - Python
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effector-prediction
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This repository contains the scripts and workflows used for the analysis of Fusarium oxysporum f. sp. lactucae (Fola) isolates.
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May 12, 2026 - Python
A comparative genomics and phylogeographic pipeline for rice bakanae disease. Features secretome filtering (SignalP/TargetP/EffectorP), PHI-base virulence prioritization , and OrthoFinder-based pangenome clustering coupled with BEAST2 diffusion analysis to model global pathogen spread.
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Apr 15, 2026 - Python
Post-processing a Fusarium oxysporum genome assembly: a dual-track (Galaxy and Python) guide, from Hi-C curation to NCBI submission
bioinformatics hi-c genome-annotation galaxy comparative-genomics scaffolding genome-assembly effector-prediction fusarium-oxysporum
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Aug 3, 2026 - Python
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