Tutorial for the usage of the dcTMD approach and Langevin simulations employing the trypsin-benzamidine complex as example.
Official PyTorch implementation of "Learning Entropy Production via Neural Networks" (PRL 2020).
Electrostatic-Quantum Transport framework based on nonequilibrium Green's function method for modeling field effect transistors (FETs)
Code developed for a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.
Python scripts for the application of dissipation-corrected targeted molecular dynamics analysis.
DropleX - Tracking and Analysis from video recordings
Wiki of a research project at the University of Cambridge, supervised by Robert Jack, and at the Université de Paris, supervised by Frédéric van Wijland.
Efficient time evolution for dynamical mean-field theory
Official PyTorch implementation of "Deep reinforcement learning for feedback control in a collective flashing ratchet" (PRR 2021).
The code for quantifying cell differentiation&reprogramming landscape-flux from single-cell transcriptomics
A falsifiable framework for programmable self-correcting matter: defect-selective actuation, autonomous proofreading, reversible assembly, and volumetric nanofabrication.
Highly experimental research on Cheonelium/Photochemistry: light-machinery nanofabrication using dark-state attractors, photonic kinetic proofreading, dissipative self-correction, and massively parallel reaction cages.
Official PyTorch implementation of "Estimating entropy production in a stochastic system with odd-parity variables".
Nonequilibrium dynamics in spin-model transformers in PyTorch
Wiki of a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.
Resource-Theoretical Unification of Mpemba Effects: Classical and Quantum
Dev repo for PoWR refactoring
An immersive, interactive visual explainer of Dimensional Memory Encoding (DME), showing how spatial pressure geometry can temporarily retain and reveal the order of past forces in a Brownian soft-particle system.
A falsifiable research program for room-temperature atomically precise manufacturing using absorbing-state error correction, charge-state chemistry, self-timed reaction latches, coherent VUV/EUV control, and nanophotonic/cavity-conditioned state selection.
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