smfret

A GPU-based program for Monte Carlo simulations of smFRET PDA.

Software for automated analysis of single molecule fluorescence and FRET (smFRET) data

A method to fit single-molecule FRET data with two steps to increase the accuracy

A Python toolkit for classifying single-molecule FRET bursts directly from raw photon timestamps using deep learning. It covers burst simulation, training of a dilated convolutional network, and inference.

Optical crosstalk in SPAD arrays for high-throughput smFRET

A demonstration app of the parameter server implementation for gSMFRETda.

Modular Python framework for single-molecule FRET data analysis

Tether - provenance-first smFRET analysis suite (movie -> trace -> corrected FRET -> idealized states). GPL-3.0.

An Experiment-Informed HDP-HMM to Analyze Surface-Immobilized smFRET Data

Python implementation of the multichannel correlation analysis framework described by M. Dhar and M. A. Berg [J. Chem. Phys. 163, 184113 (2025)] (DOI: 10.1063/5.0284658) for smFRET application

A complete end-to-end pipeline for single-molecule FRET trajectory processing, 3-state kinetic modeling with bleaching, global ensemble fitting, bootstrapping, and sensitivity analysis for Hsp90 dynamics.