sylph
Here are 6 public repositories matching this topic...
Unified short-read workflow for multi-marker amplicon (16S, ITS, 18S, gyrB, rpoB, COI) and shotgun taxonomic profiling. Snakemake, conda-based, reproducible.
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Nov 4, 2026 - Python
Putonti Lab team project: Python pipeline screening female gut metagenomes from NCBI SRA for two urogenital Lactobacillus species (L. mulieris, L. jensenii) using Sylph ANI profiling.
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Oct 14, 2026 - Python
Strict, AI-optimized TypeScript monorepo: ESLint Flat Configs, tsconfig, Prettier, and guidelines for modern TypeScript projects.
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Dec 10, 2025 - TypeScript
rachis plugin wrapping the sylph metagenome profiler and sylph-tax
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Oct 30, 2026 - Python
Upload-free, installation-free metagenomic profiling across biomes — runs entirely in your browser
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Oct 10, 2026 - JavaScript
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