tracking polymerization processes across a membrane through TIRF experiment data
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Updated
Apr 13, 2022 - MATLAB
tracking polymerization processes across a membrane through TIRF experiment data
Python code created for the Pathak lab to help analyze TIRF recordings of PIEZO1.
The Cell Edge Detection System uses a U-Net architecture to detect cell edges in TIRF (Total Internal Reflection Fluorescence) and DIC (Differential Interference Contrast) microscopy images.
A Python-based application for analyzing PIEZO1 protein distribution and membrane dynamics using TIRF microscopy data.
TIRF microscope simulator
A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)
An in-browser client-side IRM microtubule cleanup, detection, tracking and per-MT kymograph extraction.
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