whonet

Here are 3 public repositories matching this topic...

FerrumSL / amr-surveillance-r

R workflow for AMR surveillance: cleans lab and WHONET exports, interprets MIC/disk values (EUCAST/CLSI), prints a CLSI M39 cumulative antibiogram, flags MRSA/VRE/CRE, and validates against real NCBI isolates.

r surveillance public-health rstats amr epidemiology microbiology antimicrobial-resistance infection-control antibiogram whonet clsi eucast

Updated Oct 24, 2026
R

NorwegianVeterinaryInstitute / INIKA

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Repository for INIKA project - Code development and sharing

github git tutorial r course rstudio inika whonet

Updated May 16, 2025
R

Tej-Katika / amr-sentinel

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Open-source, event-driven antimicrobial resistance (AMR) surveillance and clinical stewardship platform — real-time AST ingestion, EUCAST/CLSI classification, outbreak detection (CUSUM + BOCPD), and LLM-assisted empiric therapy recommendations.

Updated Jul 20, 2026
Python

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